Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02702 ATGAACATTAGAACGATTATAATTTTCTATGCTTATCATATACTTATACATGTTCCACAAGTTTCTCTAGCATTTGAATCAATATCTCAGTCCATTTCCCTCGTAGATGATGGAAACACCTTAGTTTCCAAAGGTGGAACCTATGAACTTGGATTCTTCACCCCAGGAAATTCCAATAAACGATACCTTGGAATTTGGTACAAGAAAATTCCAATTCAAACAGTGGTTTGGGTTGCAAATAGGCTCAATCCAATCAATGATTCATCTGGAACATTAACCTTAAACAATGGCAACCTTGTTTTAACTCAGAATAATGAAACTGTTGTTTGGTCTACAACATCAAATTCTTACAATAAGCCAGAGAATCCAGTGGCACTTCTTTTAGATTCGGGTAATCTTGTGATACTAGATGAGAAAGAAGAAAACAAAGAATTGTACTTGTGGCAAAGTTTTGATTATCCAACAGACACTTTCTTACCAGAAATGAAGTTTGGTTTGGATTTTCGAACCGGTATAAATCGCCGTTTAACAGCTTGGAAGAGTCCTGATGATCCATCACCTAGTGATTTTTCTTTTGGTATGGTTCCACATAACTATCCTGATGCATATATGATGAAGGGTGATAAGATATTCTACAGAAGTGGACCATGGAATGGTTTGCATTCAAGTGGTTCACCACAAGTTAAGCCAAATCCAATTTATGATTACAGGTTTGTTTACAATAAGGATGAACTTTACTATACTTACAGCCTCAAAAACTCGTCTGCAATGACGCGGTTAGTTTTGAATGCAACCGCGTATGTTCGTTATCGTTACATATGGATCGAATCAGCGAAAAGGTGGGAAATCTACACATCGGTGCCATTGGATTTATGCGATAGTTATAAACTTTGTGGAGCTTATTCAAGCTGTGTTATTTCTGATTCGCCCGTGTGTCAATGTATGGAAGGTTTTAAGCCCAAGTCTCTGCAAGCGTGGTATTCGATGGATTGGTCTAAGGGATGTGTCCGAAATAAGGCGTTACGTTGCGAGGACAATCAAAAAGATGGATTTGTGAAAATGAGTGGTGTGAAAGTGCCTGACACTACATATAGTTGGTTGGATCAAACACTTGGTTTGGAGGAATGTAGAGTTAAGTGTTTGGAGAATTGTTCTTGTATGGCTTATGCAAATTCTGATGTAAGAGGAGAAGGAAGTGGATGTGCTTTGTGGTTTGGAGATTTGATTGACATTAGACAGTTTGCAGCTGGAGGGCAAGACTTATATGTTAGAATGGATGCTTCAGAGTTAGGACATGTCAATGAGGGTCACAAGAAGAAAGGTGTGTTAGTGGCAGTAACAGTAACAGTTTCTCTTGTCATGGCAATGCTTTCTGGTATACTTATGCTTGGTTGGTGTTATAGACATAAATCACAAAACAATGTAAAAGATAAGTCAGATTTCAGTATCAAAGGTCACCTAAAGAGTGGAATTCAAGTGGATGATGGAGATCTACCGGTCTTTAACTTGTCAACAATAGCAAAAGCCACTAACAACTTTACATTCAGCAACAAAATTGGAGAAGGTGGATTTGGACCTGTATATAGGGGGATTCTAATAGATGGAGTGGAAATTGCTGTGAAAAGGCTTTCGAAAAACTCAGGCCAAGGATTGAATGAGTTTAAAAACGAAGTGAAATTGATAGCGAAACTTCAACACCGGAATCTTGTAAAGCTTCTTGGTTGTTGCCTTGATGAAGAAGAAATAATACTGGTTTATGAATACATGCCTAATAGTAGCTTGGACTCATTCATTTTTGATAAGCTGAAAAGTGAATTACTAAATTGGTCAAAGCGTTTCGACATTATATGTGGTATTGCAAGAGGACTTGTGTATCTTCATCAGGATTCGAGACTAAGAATTATACACAGAGATCTAAAAGCTAGTAATGTTTTACTAGATAAGGAATTGAATCCTAAAATTTCAGATTTTGGTATGGCTCGTATTTTTGGAGGAGATCAGAATGAAGAAAACACAAGGAGAATAGTCGGAACATATGGTTACATGGCACCAGAATATGCCATTGGCGGTCTATTTTCAGTGAAATCAGATGTATTCAGCTTTGGTGTTTTGTTGATGGAAATTATATCAGGGAAAAGAAGTAGAGGTTACTATAATCAAAACCAAAGCCATAATCTCATAAGCTATGCATGGAAATTGTGGAAAGAAGGAAGACCAATAAAATTGATTGACAAGAGCATAGGAGAAACTTGTTTTATATCACAAATATTGCATTGTATTCATGTTAGTCTCTTGTGTGTTCAACAGAATCCAGAGGATAGGCCTATAATGTCATGTGTGATCCTAATGTTGGTGAGTGAGTTTGAATTGGCTGAACCTAAACAGCCAGGATTCTTTATGAAAGATTCAAGTGAAGCAGACTCCTCCACAAATAAACAGATGTTGAGTTCTACAAATGAAGTAACCATGACACTATTGGAAGCTAGATGA 2490 0.3715 MNIRTIIIFYAYHILIHVPQVSLAFESISQSISLVDDGNTLVSKGGTYELGFFTPGNSNKRYLGIWYKKIPIQTVVWVANRLNPINDSSGTLTLNNGNLVLTQNNETVVWSTTSNSYNKPENPVALLLDSGNLVILDEKEENKELYLWQSFDYPTDTFLPEMKFGLDFRTGINRRLTAWKSPDDPSPSDFSFGMVPHNYPDAYMMKGDKIFYRSGPWNGLHSSGSPQVKPNPIYDYRFVYNKDELYYTYSLKNSSAMTRLVLNATAYVRYRYIWIESAKRWEIYTSVPLDLCDSYKLCGAYSSCVISDSPVCQCMEGFKPKSLQAWYSMDWSKGCVRNKALRCEDNQKDGFVKMSGVKVPDTTYSWLDQTLGLEECRVKCLENCSCMAYANSDVRGEGSGCALWFGDLIDIRQFAAGGQDLYVRMDASELGHVNEGHKKKGVLVAVTVTVSLVMAMLSGILMLGWCYRHKSQNNVKDKSDFSIKGHLKSGIQVDDGDLPVFNLSTIAKATNNFTFSNKIGEGGFGPVYRGILIDGVEIAVKRLSKNSGQGLNEFKNEVKLIAKLQHRNLVKLLGCCLDEEEIILVYEYMPNSSLDSFIFDKLKSELLNWSKRFDIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDKELNPKISDFGMARIFGGDQNEENTRRIVGTYGYMAPEYAIGGLFSVKSDVFSFGVLLMEIISGKRSRGYYNQNQSHNLISYAWKLWKEGRPIKLIDKSIGETCFISQILHCIHVSLLCVQQNPEDRPIMSCVILMLVSEFELAEPKQPGFFMKDSSEADSSTNKQMLSSTNEVTMTLLEAR 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02702 829 ProSiteProfiles PAN/Apple domain profile. 343 426 IPR003609 -
Vifa1g02702 829 Pfam PAN-like domain 343 411 IPR003609 -
Vifa1g02702 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 478 588 - -
Vifa1g02702 829 Gene3D Phosphorylase Kinase; domain 1 475 588 - -
Vifa1g02702 829 SMART serkin_6 513 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02702 829 SUPERFAMILY Protein kinase-like (PK-like) 498 811 IPR011009 -
Vifa1g02702 829 Pfam S-locus glycoprotein domain 212 322 IPR000858 GO:0048544
Vifa1g02702 829 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 28 774 - -
Vifa1g02702 829 Pfam Protein tyrosine and serine/threonine kinase 514 779 IPR001245 GO:0004672|GO:0006468
Vifa1g02702 829 Gene3D - 26 151 IPR036426 -
Vifa1g02702 829 Gene3D Transferase(Phosphotransferase) domain 1 589 795 - -
Vifa1g02702 829 CDD PAN_AP_plant 341 424 - -
Vifa1g02702 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 185 IPR036426 -
Vifa1g02702 829 SMART blect_4 32 154 IPR001480 -
Vifa1g02702 829 ProSiteProfiles Protein kinase domain profile. 513 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02702 829 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Vifa1g02702 829 SMART ntp_6 346 425 IPR003609 -
Vifa1g02702 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 342 425 - -
Vifa1g02702 829 Pfam D-mannose binding lectin 74 180 IPR001480 -
Vifa1g02702 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 792 - -
Vifa1g02702 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Vifa1g02702 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 151 - -
Vifa1g02702 829 Pfam Domain of unknown function (DUF3403) 788 829 IPR021820 GO:0004674
Vifa1g02702 829 CDD B_lectin 37 154 IPR001480 -
Vifa1g02702 829 CDD STKc_IRAK 519 784 - -
Vifa1g02702 829 PIRSF SRK 1 829 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02702 Vifa-Chr1 424853512 424856677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02702 442 798 Receptor kinase-like Gene Family AT4G23230 53.911 3.13e-129 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g02702 PK_Tyr_Ser-Thr 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02702 - - gmx:100778155 1275.77