Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02696 ATGGCTGATGATGATCAATTTCATCATGCAAGTGGAAACTGGTGGGAATCAGCATCAAGAAACATGAGATTTGATCAAAGTGGTGGAACATCACAACAATCTTCTTCTTCTGCCATCACCAACAATAATATAGTTGATTTTGGTTGGCAAAATTCAGATATGGTTGAGATGAAACCAAGATCTTCCATGGATAATTCTTCTGTGGTTTTTCATGATACTCGGAAACTCGAACAAAATCAAGATTCTTCAAATTCTACTGACCCCAACTTGCATATGATGGGTTTGGGACTTTCTTCTCATTCCATGGATTGGAATCAACAATCTTTGATAAGAGGTGATGAAAAGGGAACAGAAAACAGTTTCAGGTCAATATTGGAAGAGAATTTGAGTTCAACAAGGAACAATTTTGAGCAAGAAAATGTGATGGGAATGTGTCAACAAGTGAATAGAAATTTTTCTTTGGATCAAAACCAGTTTAGTCCTCAATATAGTTCTGGAGATAGCAATGTTATTCAAATGGATTCTTCAGCTTTATATGGAACTCCATCAATTTTACAAGGCTCATCCATGAGTAGTTTCCCATATCCAACAAATAACTATGTATTATTAAACTCTAACAATGAGTTGAATATGAACATGCCTTGTAATAATTGGTCTAATAATAAAGTTCCTCAGTTTTTGATGAGAGCTTCACCTCCAAAACAATCATCAACAAATAACCAGTTGCATTTTACTAATAACACCCCTTTTTGGAATGCTTCCGAGGGCCCGAATTCTATTAAGGATGTTAGGTCAAGTTTCTTCCCCTCTTTGCAACCTCAATTCTCTACACCAAATTTTGATTCACACTCAAAGAATATAAGTGAAGTGAATACTGTGGTGAAGAAAAGTGGGAGTGAGCCAGCACCAAAAAGGACTCGTAACGAAACTCCATCAACTTTGCCAGCTTTTAAGGTCAGAAAGGAAAAGATGGGAGACAGAATCACTGCACTCCAACAATTGGTGTCTCCTTTTGGAAAGACTGATACAGCCTCAGTGCTTTCTGAAGCCATTGAATATATCAAATTTCTTCATGAACAAGTCACACTTTTGAGCACCCCGTATATGAAAAGTGGAGCTTCATCAGAGATTCAACAGAACTCGGGTAAATCAAAAAAATCCGAGGGCGCAAAGCAAGATCTAAGAAGTCGAGGTCTATGTTTGGTACCAATTTCAAGCACATTTCCAGTGACTCATGAAACAACAGTTGATTTTTGGACACCAACATTTGGAGGAACATCAAGATAA 1287 0.3722 MADDDQFHHASGNWWESASRNMRFDQSGGTSQQSSSSAITNNNIVDFGWQNSDMVEMKPRSSMDNSSVVFHDTRKLEQNQDSSNSTDPNLHMMGLGLSSHSMDWNQQSLIRGDEKGTENSFRSILEENLSSTRNNFEQENVMGMCQQVNRNFSLDQNQFSPQYSSGDSNVIQMDSSALYGTPSILQGSSMSSFPYPTNNYVLLNSNNELNMNMPCNNWSNNKVPQFLMRASPPKQSSTNNQLHFTNNTPFWNASEGPNSIKDVRSSFFPSLQPQFSTPNFDSHSKNISEVNTVVKKSGSEPAPKRTRNETPSTLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTLLSTPYMKSGASSEIQQNSGKSKKSEGAKQDLRSRGLCLVPISSTFPVTHETTVDFWTPTFGGTSR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02696 428 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 134 409 - -
Vifa1g02696 428 CDD bHLH_AtbHLH_like 314 365 IPR045239 -
Vifa1g02696 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Vifa1g02696 428 Gene3D - 318 385 IPR036638 GO:0046983
Vifa1g02696 428 SMART finulus 319 363 IPR011598 GO:0046983
Vifa1g02696 428 FunFam Transcription factor bHLH123 family 318 380 - -
Vifa1g02696 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 370 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02696 Vifa-Chr1 423252346 423255164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02696 242 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 61.111 7.04e-69 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02696 - - gmx:100778697 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02696 1 423252346 423255164 Vifa1g02696 1 423252346 423255164 ECH