Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02685 ATGGATTCACAGCAACTTTATAGTTTCAATATGACAAGTGCAGGATTACCCAACATGTCATCTTTTTCCACTATTCCACTACAGAATGGTTTGCTTGGTTCCTTGAAAGTTGGCATTGGAAACTCACCTGATTCGCCTTTTTCGTCTCATTTTGATTCAGATACTCTTTCTGCATTTGGTGACAATTATGAGCAACAGAACTCGGGTGAAACGCTCTCTGGTATAAGCATCTCGTATAACTCAGCACTGGAAACCAACCGTTACTTGCAAAGATCGGTTTCATCGGTCGACAATCTCAAGGAAAATTTGCAATTATATTCAGCTAGACGATCTCTTCCGCCAAGTTGTAACCAGATAGTCCAACATGCCTTGTTGGAACTAGAAACTGCGCTGATGGCTCCGGATGATAACGAAGTTACCACATCTAATTCTTCATTTGGTGAGAGCATCAAGGAAACGGCATCTGGACCGAGATATAGATCATGGGGCCATGTGAGCCAAGGGTCACAATACATTCAAAATCAACCATCACATGCTACTAGCAGTAGTAGGCAATCAAATGAAGTTGTGCATGTAGAAAAACGTCGAAAGTTGGAGGAGTCGTCTCTACAAGGGTTCCCATCAGGTGATTTAAAGCAATTACTGATTGCATGTGCCAAAGCCATGGCTGAAAACGACACACAAGATTTCAACCGATTGATAGAAACGGTTAGAAATGCTGTGTCTATCAACGGGGAGCCAATTCAGAGGCTCGGTGCTTATATGATAGAAGGGCTTGTTGCAAGGAAGGAAGCGTCGGGGAATAGCATCTATCGTGCTCTTAAGTGTAGAGAGCCTGAAGGTGAAGAATTACTCTCCTACATGCATCTGCTTTACGAAATATGTCCCTACTTGAAATTTGGTTACATGGCTGCGAATGGAGCCATTGCCGAAGCTTGTAGGAATGAGGATCACGTACACATCATCGACTTTCAAATTGCTCAAGGAACTCAATGGATGACACTTCTTCAAGCTCTTGCTGCAAGACCTGGCGGGGCTCCCCATGTGCGTATCACAGGAATCGACGATCCAGTCTCTAGATATGCTCGTGGAGAAGGACTAGAAGTAGTCGGGAAAAGATTGGCCTTGATGTCAAAGAAATTCGGCATCCCAGTTGAGTTTCACGGGCTCTCCGTTTTCGGTCCCGATGTTACAAGAAACATGCTCCATATCAGACATGGAGAAGCTTTGGCTGTGAATTTTCCATTGCAACTCCATCACACAGCTGATGAGAGTGTTGATGTGAATAATCCAAGAGATGGACTTTTGAGATTGGTGAAATCTCTCTCTCCGAAAGTGGTCACACTCGTCGAGCAGGAATCAAACACAAACACAACCCCTTTCTTCAACAGGTTCATAGAAACTTTAGATTACTACTTGGCAATCTTCGAGTCAATCGATGTAACTCTCTCGAGAAACAGCAAGGAGAGGATTAACGTGGAGCAGCACTGTTTAGCTCGGGATATCGTCAATATCATTGCTTGTGAAGGAAAAGAAAGGATCGAGCGGCACGAACTGTTCGGCAAGTGGAAGTCAAGGCTGACAATGGCCGGATTTACTCAATGTCCTTTGAGTTCTTATGTGAATTCTGTTATAAGAAGCCTTCTGAGATGCTATTCGGAGCATTATACATTAGTGGAGAAAGATGGGGCCATGTTGTTGGGGTGGAAGAGCAGAAATTTGATATCAGCTTCAGCTTGGCATTGA 1746 0.4387 MDSQQLYSFNMTSAGLPNMSSFSTIPLQNGLLGSLKVGIGNSPDSPFSSHFDSDTLSAFGDNYEQQNSGETLSGISISYNSALETNRYLQRSVSSVDNLKENLQLYSARRSLPPSCNQIVQHALLELETALMAPDDNEVTTSNSSFGESIKETASGPRYRSWGHVSQGSQYIQNQPSHATSSSRQSNEVVHVEKRRKLEESSLQGFPSGDLKQLLIACAKAMAENDTQDFNRLIETVRNAVSINGEPIQRLGAYMIEGLVARKEASGNSIYRALKCREPEGEELLSYMHLLYEICPYLKFGYMAANGAIAEACRNEDHVHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSRYARGEGLEVVGKRLALMSKKFGIPVEFHGLSVFGPDVTRNMLHIRHGEALAVNFPLQLHHTADESVDVNNPRDGLLRLVKSLSPKVVTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLSRNSKERINVEQHCLARDIVNIIACEGKERIERHELFGKWKSRLTMAGFTQCPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKSRNLISASAWH 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02685 581 MobiDBLite consensus disorder prediction 170 187 - -
Vifa1g02685 581 MobiDBLite consensus disorder prediction 170 189 - -
Vifa1g02685 581 ProSiteProfiles GRAS family profile. 202 581 IPR005202 -
Vifa1g02685 581 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 169 577 IPR005202 -
Vifa1g02685 581 MobiDBLite consensus disorder prediction 138 159 - -
Vifa1g02685 581 Pfam GRAS domain family 211 580 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02685 Vifa-Chr1 421554125 421555870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02685 201 580 GRAS Transcription Factor Family AT5G48150 63.780 2.41e-176 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g02685 GRAS 5.5e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02685 - - adu:107462432 883.634