Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02684 ATGTCAGACGACATGCTCGTTCATTTTGCGTCGAATTCTTCTAACCAATCGGATCAGTCTCTGCCTACAAAGATTGCTAAGCTGGAAGCTCGAATGGTGGGAAAAGCTTCCTCCACTGCTTCTCAGCAACCGGGTTGGCCTTCTGTTTCTTCTGCTGGGAAATTTGGTGGTCCAGCTGAAGAAATGGTGGAGCCTTCTTCTTCTTCAAGTGATTCTGATGATGATAATGGTGGGGAGTTCTTGATTCAAGCCAACACACGGAAGCGGCTAAAAGTTCAAGAAGATGTTAACGAGGCTGTTACTGATGGAAGACAAACTAATTTGGAGGCTGTGGAGACAAAAAATAATGTTGATGCAAATAGAAAGAAATCTGGCCGAGGAAGAGGGGGTTCTGGTTCAGGTAGGGGCCGTGGTTCCAAATCTAATGATCAGACCAGAACACAAAATTCTCTCCCGGCTTCAGATGTATCCCATAAAGATGGTAGACTCAAAGATCAGCTTCACAGTGATAATAGTGCTTCATTAAAGGAGGAGATTGCATCTTTACGTGCTAAAGTTGCTGTGTTGGAGGAAGACTTGCGTAAAGCGAAGCAAGAAACCTCTGAGCATAAGAACCTTTGTCCACAGATAGAAAAGGAACTGCGGGAACTCAAGGATCTTGAACAGCAAATGAAGCCTAAGAGAACAAAAATAATATCTGATTTGTTGATATCAGTTTCAAAAGCTGAGAGACAAGAAGCAAGGCTAAAAGTACGACAAGACTCACTGAGACTTGGAAATGTTGGTGTATCCAGAGCTGGAACTGTCTTAACTGAGACCTGGGAAGATGGCCAGGAGTTAAAGGATATATTTGCTCAGCTTAAACAACTAACGGAAAAAAGGGAGGCAATTATACGGCAGCGCAAGTTATTTAAGGAAAAACAATCTGATAAGGGCGATGGAATAAATGCAGAGGCTGGATTACTGGAAGATGTTCTCATTCAGGATGAAATATATAAGGCTCGACTAGCGAACATTAAACGAGAAGAAGAATCTATCTTACGAGAGAAGGACCGCTACGACCTAGAGAAGGGAAGGTTAATTCGTGAAATGAAACGTATACGGGATGAAGATGGTTCTCGGTTCAACAGCTTTCAAATTCTAAACCATCGTTATGCTCTTTTAAACCTTCTTGGAAAGGGAGGATTCAGCGAGGTGTACAAGCAGGCTTTTGACTTGGTGGATCATAGATATGTTGCTTGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATAAGGCATGCAATTCGAGAGTATAATATTCACAAGACCTTGGTTCATCCTCACATTGTTCGCCTATGGGACATCTTTGAGATTGATCATAATACATTTTGCACTGTTCTCGAGTATTGTAGTGGGAAAGATCTCGACGCTGTTCTTAAAACAACATCTTCATTGCCCGAGAAGGAAGCTAGGGTCATTTTAGTTCAGATTTTCCAAGGCCTTATATACATGAATAAAAGAACACTGAAAATTATCCATTATGATTTAAAGCCTGGAAATGTTTTGTTTGATGAGCTTGGTAGTGCCAAAGTGACTGACTTTGGTCTTAGCAAGATTGTGGAGAATGATGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGGGCCGGGACATATTGGTATTTGCCTCCTGAATGCTTCGAGCTCAACAAGACACCTCTTATATCATCCAAGGTTGATGTATGGTCTGCTGGTGTTTTGTTTTATCAAATGCTCTTTGGTAAACGTCCTTTCGGACATGACCAATCACAGGAGAAAATACTTCGCGAAGACACAATTATTAATGCTCGCAAGGTTGAATTTCCCTCTAAACCTACTGTTTCTAGTGAGGCAAAGGAATTCATTCGGCGATGTCTTACATATAATCAGAGTGATAGACCGGATGTATTAACTATTGCTCAAGATCCATATCTCACTTATTCAAAGAAACAGTGA 1998 0.4149 MSDDMLVHFASNSSNQSDQSLPTKIAKLEARMVGKASSTASQQPGWPSVSSAGKFGGPAEEMVEPSSSSSDSDDDNGGEFLIQANTRKRLKVQEDVNEAVTDGRQTNLEAVETKNNVDANRKKSGRGRGGSGSGRGRGSKSNDQTRTQNSLPASDVSHKDGRLKDQLHSDNSASLKEEIASLRAKVAVLEEDLRKAKQETSEHKNLCPQIEKELRELKDLEQQMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVSRAGTVLTETWEDGQELKDIFAQLKQLTEKREAIIRQRKLFKEKQSDKGDGINAEAGLLEDVLIQDEIYKARLANIKREEESILREKDRYDLEKGRLIREMKRIRDEDGSRFNSFQILNHRYALLNLLGKGGFSEVYKQAFDLVDHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHPHIVRLWDIFEIDHNTFCTVLEYCSGKDLDAVLKTTSSLPEKEARVILVQIFQGLIYMNKRTLKIIHYDLKPGNVLFDELGSAKVTDFGLSKIVENDVGSQGMELTSQGAGTYWYLPPECFELNKTPLISSKVDVWSAGVLFYQMLFGKRPFGHDQSQEKILREDTIINARKVEFPSKPTVSSEAKEFIRRCLTYNQSDRPDVLTIAQDPYLTYSKKQ 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02684 665 MobiDBLite consensus disorder prediction 99 114 - -
Vifa1g02684 665 Gene3D Transferase(Phosphotransferase) domain 1 376 665 - -
Vifa1g02684 665 MobiDBLite consensus disorder prediction 1 171 - -
Vifa1g02684 665 ProSiteProfiles Protein kinase domain profile. 385 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02684 665 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g02684 665 MobiDBLite consensus disorder prediction 135 155 - -
Vifa1g02684 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672|GO:0006468
Vifa1g02684 665 CDD STKc_TLK 384 658 - -
Vifa1g02684 665 SUPERFAMILY Protein kinase-like (PK-like) 377 660 IPR011009 -
Vifa1g02684 665 Coils Coil 210 230 - -
Vifa1g02684 665 SMART serkin_6 385 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02684 665 FunFam Serine/threonine-protein kinase TOUSLED 376 664 - -
Vifa1g02684 665 MobiDBLite consensus disorder prediction 35 49 - -
Vifa1g02684 665 Coils Coil 336 370 - -
Vifa1g02684 665 MobiDBLite consensus disorder prediction 157 171 - -
Vifa1g02684 665 PANTHER MIXED LINEAGE PROTEIN KINASE 11 664 - -
Vifa1g02684 665 Coils Coil 280 307 - -
Vifa1g02684 665 Coils Coil 172 206 - -
Vifa1g02684 665 Pfam Protein kinase domain 386 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02684 Vifa-Chr1 421165290 421174697 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02684 390 665 MAP Kinase Kinase Kinase AT1G09000 29.603 9.23e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Vifa1g02684 Pkinase 1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02684 K08864 - gmx:100805168 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02684 1 421165290 421174697 Vifa1g02684 1 421165290 421174697 ECH