Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02683 ATGTCAGACGACATGCTCGTTCATTTTGCGTCGAATTCTTCTAACCAATCGGATCAGTCTCTGCCTACAAAGATTGCTAAGCTGGAAGCTCGAATGGTGGGAAAAGCTTCCTCCACTGCTTCTCAGCAACCGGGTTGGCCTTCTGTTTCTTCTGCTGGGAAATTTGGTGGTCCAGCTGAAGAAATGGTGGAGCCTTCTTCTTCTTCAAGTGATTCTGATGATGATAATGGTGGGGAGTTCTTGATTCAAGCCAACACACGGAAGCGGCTAAAAGTTCAAGAAGATGTTAACGAGGCTGTTACTGATGGAAGACAAACTAATTTGGAGGCTGTGGAGACAAAAAATAATGTTGATGCAAATAGAAAGAAATCTGGCCGAGGAAGAGGGGGTTCTGGTTCAGGTAGGGGCCGTGGTTCCAAATCTAATGATCAGACCAGAACACAAAATTCTCTCCCGGCTTCAGATGTATCCCATAAAGATGGTAGACTCAAAGATCAGCTTCACAGTGATAATAGTGCTTCATTAAAGGAGGAGATTGCATCTTTACGTGCTAAAGTTGCTGTGTTGGAGGAAGACTTGCGTAAAGCGAAGCAAGAAACCTCTGAGCATAAGAACCTTTGTCCACAGATAGAAAAGGAACTGCGGGAACTCAAGGATCTTGAACAGCAAATGAAGCCTAAGAGAACAAAAATAATATCTGATTTGTTGATATCAGTTTCAAAAGCTGAGAGACAAGAAGCAAGGCTAAAAGTACGACAAGACTCACTGAGACTTGGAAATGTTGGTGTATCCAGAGCTGGAACTGTCTTAACTGAGACCTGGGAAGATGGCCAGGAGTTAAAGGATATATTTGCTCAGCTTAAACAACTAACGGAAAAAAGGGAGGCAATTATACGGCAGCGCAAGTTATTTAAGGAAAAACAATCTGATAAGGGCGATGGAATAAATGCAGAGGCTGGATTACTGGAAGATGTTCTCATTCAGGATGAAATATATAAGGCTCGACTAGCGAACATTAAACGAGAAGAAGAATCTATCTTACGAGAGAAGGACCGCTACGACCTAGAGAAGGGAAGGTTAATTCGTGAAATGAAACGTATACGGGATGAAGATGGTTCTCGGTTCAACAGCTTTCAAATTCTAAACCATCGTTATGCTCTTTTAAACCTTCTTGGAAAGGGAGGATTCAGCGAGGTGTACAAGGCTTTTGACTTGGTGGATCATAGATATGTTGCTTGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATAAGGCATGCAATTCGAGAGTATAATATTCACAAGACCTTGGTTCATCCTCACATTGTTCGCCTATGGGACATCTTTGAGATTGATCATAATACATTTTGCACTGTTCTCGAGTATTGTAGTGGGAAAGATCTCGACGCTGTTCTTAAAACAACATCTTCATTGCCCGAGAAGGAAGCTAGGGTCATTTTAGTTCAGATTTTCCAAGGCCTTATATACATGAATAAAAGAACACTGAAAATTATCCATTATGATTTAAAGCCTGGAAATGTTTTGTTTGATGAGCTTGGTAGTGCCAAAGTGACTGACTTTGGTCTTAGCAAGATTGTGGAGAATGATGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGGGCCGGGACATATTGGTATTTGCCTCCTGAATGCTTCGAGCTCAACAAGACACCTCTTATATCATCCAAGGTTGATGTATGGTCTGCTGGTGTTTTGTTTTATCAAATGCTCTTTGGTAAACGTCCTTTCGGACATGACCAATCACAGGAGAAAATACTTCGCGAAGACACAATTATTAATGCTCGCAAGGTTGAATTTCCCTCTAAACCTACTGTTTCTAGTGAGGCAAAGGAATTCATTCGGCGATGTCTTACATATAATCAGAGTGATAGACCGGATGTATTAACTATTGCTCAAGATCCATATCTCACTTATTCAAAGAAACAGTGA 1995 0.4145 MSDDMLVHFASNSSNQSDQSLPTKIAKLEARMVGKASSTASQQPGWPSVSSAGKFGGPAEEMVEPSSSSSDSDDDNGGEFLIQANTRKRLKVQEDVNEAVTDGRQTNLEAVETKNNVDANRKKSGRGRGGSGSGRGRGSKSNDQTRTQNSLPASDVSHKDGRLKDQLHSDNSASLKEEIASLRAKVAVLEEDLRKAKQETSEHKNLCPQIEKELRELKDLEQQMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVSRAGTVLTETWEDGQELKDIFAQLKQLTEKREAIIRQRKLFKEKQSDKGDGINAEAGLLEDVLIQDEIYKARLANIKREEESILREKDRYDLEKGRLIREMKRIRDEDGSRFNSFQILNHRYALLNLLGKGGFSEVYKAFDLVDHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHPHIVRLWDIFEIDHNTFCTVLEYCSGKDLDAVLKTTSSLPEKEARVILVQIFQGLIYMNKRTLKIIHYDLKPGNVLFDELGSAKVTDFGLSKIVENDVGSQGMELTSQGAGTYWYLPPECFELNKTPLISSKVDVWSAGVLFYQMLFGKRPFGHDQSQEKILREDTIINARKVEFPSKPTVSSEAKEFIRRCLTYNQSDRPDVLTIAQDPYLTYSKKQ 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02683 664 MobiDBLite consensus disorder prediction 99 114 - -
Vifa1g02683 664 SUPERFAMILY Protein kinase-like (PK-like) 377 659 IPR011009 -
Vifa1g02683 664 MobiDBLite consensus disorder prediction 1 171 - -
Vifa1g02683 664 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g02683 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Vifa1g02683 664 PANTHER MIXED LINEAGE PROTEIN KINASE 11 663 - -
Vifa1g02683 664 MobiDBLite consensus disorder prediction 135 155 - -
Vifa1g02683 664 CDD STKc_TLK 384 657 - -
Vifa1g02683 664 ProSitePatterns Protein kinases ATP-binding region signature. 391 414 IPR017441 GO:0005524
Vifa1g02683 664 ProSiteProfiles Protein kinase domain profile. 385 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02683 664 Coils Coil 210 230 - -
Vifa1g02683 664 FunFam Serine/threonine-protein kinase TOUSLED 376 663 - -
Vifa1g02683 664 Pfam Protein kinase domain 386 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02683 664 MobiDBLite consensus disorder prediction 35 49 - -
Vifa1g02683 664 Coils Coil 336 370 - -
Vifa1g02683 664 MobiDBLite consensus disorder prediction 157 171 - -
Vifa1g02683 664 SMART serkin_6 385 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02683 664 Gene3D Transferase(Phosphotransferase) domain 1 376 664 - -
Vifa1g02683 664 Coils Coil 280 307 - -
Vifa1g02683 664 Coils Coil 172 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02683 Vifa-Chr1 421165290 421174697 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02683 390 664 MAP Kinase Kinase Kinase AT1G09000 29.710 4.23e-27 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Vifa1g02683 Pkinase 1.1e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02683 K08864 - gmx:100805168 1060.83