Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02677 ATGAAAGAGGAATCTACAGGGTTAATTATTGGGATTTCCATAGATTCAACCTTAGCTCCTGAATCTCCTGTTAGGTCTGGAAGAAATGGCATGAATTTTTGGATTGATGGTTTCAAGAAGAGTAACATGGTTTCTGCATCTGGAATACTTGAATATTCATACAAGGACTTACAAAAGGCCACATATAATTTCACAACACTGATAGGACAAGGTGCATTTGGTCTTGTATATAAAGCTCAAATGTCTACCGGTGAGACTGTTGCGGTGAAAGTTCTTGCAACCAATTCTAAACAAGGGGAGAAAGAATTTCACACCGAGGTTATGTTGTTGGGAAGATTACACCATAGAAACTTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGTCAACATATGCTTGTTTATGTCTACATGAGTAAAGGCAACTTGGCTTCCCACTTGTACAGTGAAGAGAATGGGAATCTGGGCTGGGATTTGAGGGTTCATATAGCTTTAGATGTAGCAAGAGGCCTGGAGTATCTTCACGATGGGGCCGTTCCTCCTGTCATCCATCGCGACATCAAATCTAACAATATTCTCTTGGATCAGTCCATGCGAGCCCGGGTTGCTGATTTTGGACTTTCACGAGAAGAGATGGTGGATAAACATGCAGCTATTCGCGGTACCTTTGGCTATCTTGATCCCGAGTATATATCTTCAGGGACATTCACGAAGAAAAGTGATGTATACAGTTTCGGAGTGTTGCTCTTTGAACTCATAGCCGGACGAAACCCTCAGCAGGGTCTTATGGAATATGTTGAACTTGCGGCGATGAACACCGAAGGGAAAGTCGGTTGGGAGGAGATAGTTGATTCAAAGCTCGAAGGAAAATGTGATTTCCAAGAATTAAACGAAGTAGCAGCACTTGCGTACAAATGCATCAACCGCGCCCCGAGGAAGCGTCCTTCGATGAGGGACATAGTTCAAGTATTGACTCGGATCCTTAAAGCAAGGCACCAGAGGAATCATCATCACAAGAATTCGCTTTCGGAGACAGCAGATGAAGTTGCAATGGATGTCGATGAGGCGGAAAATAAGGATTCTGTTACTACTGACCACCACAGAAGAGATGAATCTATAGATAGTACAACTGACATGTATGATTTGTGA 1149 0.4273 MKEESTGLIIGISIDSTLAPESPVRSGRNGMNFWIDGFKKSNMVSASGILEYSYKDLQKATYNFTTLIGQGAFGLVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGNLASHLYSEENGNLGWDLRVHIALDVARGLEYLHDGAVPPVIHRDIKSNNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSKLEGKCDFQELNEVAALAYKCINRAPRKRPSMRDIVQVLTRILKARHQRNHHHKNSLSETADEVAMDVDEAENKDSVTTDHHRRDESIDSTTDMYDL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02677 382 SUPERFAMILY Protein kinase-like (PK-like) 54 337 IPR011009 -
Vifa1g02677 382 ProSiteProfiles Protein kinase domain profile. 62 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02677 382 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Vifa1g02677 382 PIRSF TyrPK_CSF1-R 149 381 - -
Vifa1g02677 382 PIRSF TyrPK_CSF1-R 56 155 - -
Vifa1g02677 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Vifa1g02677 382 Coils Coil 339 359 - -
Vifa1g02677 382 Gene3D Phosphorylase Kinase; domain 1 35 137 - -
Vifa1g02677 382 CDD STKc_IRAK 68 327 - -
Vifa1g02677 382 MobiDBLite consensus disorder prediction 356 376 - -
Vifa1g02677 382 FunFam calcium/calmodulin-regulated receptor-like kinase 1 138 347 - -
Vifa1g02677 382 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 36 137 - -
Vifa1g02677 382 Gene3D Transferase(Phosphotransferase) domain 1 138 354 - -
Vifa1g02677 382 MobiDBLite consensus disorder prediction 356 382 - -
Vifa1g02677 382 SMART serkin_6 62 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02677 382 PANTHER OS01G0750732 PROTEIN 39 346 - -
Vifa1g02677 382 Pfam Protein tyrosine and serine/threonine kinase 64 324 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02677 Vifa-Chr1 420419890 420422190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02677 52 324 Glycoside Hydrolase AT3G07070 45.172 1.24e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vifa1g02677 PK_Tyr_Ser-Thr 8.6e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02677 - - gmx:100799586 677.552