Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02675 ATGACTGGTGGAATGTCATTGGGTCAGACATTTCCATGCATAGATGCATTTACTACAGAACAAGTAGCTGCATATAAAATGTTTGAGACGATTAAAAGAAAGCCAAAAATTGATGCATATGACACAAGTGGTGAAATCTTGGAGGACATAAAGGGATATATTGAACTCAAAGATGTTTACTTCAGATACCCTACAAGTCCGAACGTGCAGATATTTGCTGGATTTTCACAGTTTGTTCCAAGTGGCACAACTACTGCTTTGGTGGGTCAAAGTGGAAGTGGAAAGTCTTCTGCGATCAGCTTATTGGATGGATTCTATGATCTTGATGCTGGAGAAGCACTTATAGATGGTGTGAATTTGAAGAACTTGCAACTTAAATGGATAAGGGATCAGATTGGATTGGTTAATCAAGAGCCTATATTGTTTACTACTACTATCAGAGAGAGCATGGCGTATGGGAAAGAAGGTGCAACTGATAAAGAGATAACAGCGGCAATAACACTTTCTAATGCGAAAAAGTTCATCGACAAACTGCCTCAGGGCCTTGACACCATGGCGAGACAAAATTTGTGA 573 0.3962 MTGGMSLGQTFPCIDAFTTEQVAAYKMFETIKRKPKIDAYDTSGEILEDIKGYIELKDVYFRYPTSPNVQIFAGFSQFVPSGTTTALVGQSGSGKSSAISLLDGFYDLDAGEALIDGVNLKNLQLKWIRDQIGLVNQEPILFTTTIRESMAYGKEGATDKEITAAITLSNAKKFIDKLPQGLDTMARQNL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02675 190 Pfam ABC transporter 79 173 IPR003439 GO:0005524
Vifa1g02675 190 PANTHER ABC TRANSPORTER B FAMILY 1 186 IPR039421 -
Vifa1g02675 190 Gene3D - 44 185 IPR027417 -
Vifa1g02675 190 Gene3D ABC transporter type 1, transmembrane domain 1 43 IPR036640 GO:0005524|GO:0016020
Vifa1g02675 190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 188 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02675 Vifa-Chr1 420405333 420406070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02675 1 184 Calmodulin-binding Proteins AT2G36910 48.913 7.88e-51 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02675 K05658 - gmx:100801771 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00417 1 66201900 66206104 Vifa1g02675 1 420405333 420406070 PCT