Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02669 ATGGTAATGATTCAACAATATATGGGTGTCATAAAGTCTGTATTTTGCATTGTCTTGGTTCTCAATATTGTAGCAGTTATCAGCATTGAAGAAAAGAAGGAAACAGAAGAAGAATTTGTTGGCAAATTGTTTGATCCTGCATCTGAAATATTGGACGAGGATACGGCAGAGATTCTATGTACCATTTGCATGGAAGATTTGATTCATGTAACGAAAGATATTGGAGATCTTGGCTTATGCCTACCAAAGGAATCACATAGTAGAACCAATGAAGTTACCTCAGAATTCAGATCAACGGCAAGAGAAAACATCCAAAATTTGATTAGTACTTGCAGTCCACAGTTGAAGGAAAACTTTCTTAACTGTTTGAGAAAACACAACGTTCCATTCCAAGATCAATCCAAGAATTGGATCACTGCTTACGAGGGATCAGGTTCGTCCAGAAGATATCCGCGTCGAGTTTCGCCTCGATACTTAGCAGAAAAACAAGACAATGATGGATCGTCTAAAAAAGATAAAAGTGATAATGGTTCTGATAAATCATCAAAGAAGAAGTCGAAATCTTCTGACTCTAAAAATAAACAACACGAGAAAGCGGTTTATAATGCCATGGCTATGACTGCAATGGTGATGTTTGTAATTGCAGCATGTACCTTTTTATGTTATTGTAGGTGTTGTGGAAGTGGTAGAGTTAATCAAACTGATGAAAGACCGCTTCTCAGCATGAGCAGGAGTGATTATTCTGTTGGTTCTTCAAATAATAACTCAAGAATTTCAGTAAAAGAGGAGAAACATGGAGTTCAATCAATAAGTAGTATTTTGGTTGAAGAGAAAAAGAACTCAATGAAAGAAGATGCTTCAAGACCATCTTTTGATCTTAAACCTCCACCTGGTAGGGTTGGAAATGGTAAGAACTCAATGAAAGAAGATGCTTCAAGACCATCTTTTGATCTTAAACCTCCACCTGGTAGGGTTGGAAATGGTATTCCGCCTTTGAAACCTCCTCCAGGAAGAACTGATCCTCTTCCACCCGAACCACCACCAGTTAAGAGTTTTGACTATGCCGTTAATCCACCGCCACCACCTCCTCCCCCTGGACTACAAATGCCTAGCAGTAGTGGTGCTCTTCCTCCCGGACTACCAAAGCCTGGCGGCGGTGGCCCTCCTCCACCTCCACCGCCGAAACTTGGCAATAGTGGTCCTAAGCCTCCTCCACCACCACCACCGCGTGGAAAATCAGGCGGTCCTCGACCACCACCACCTCCTAAGAGTGGTGCAGGTCCTCCAAGAGCTCCACCTCCATTTGGTCAAAAAGGTCCTAGACCTTTACCTAGTGGACCAAAGGTTCAAGGGAAAGTTGAAGTTAGTTCAGAAGGTGAAGGTGAAGCTGAAGCTGATGATGCTCCTAAAACCAAGTTAAAGCCTTTTTTCTGGGATAAGGTTCAAGCCAACTCAGATCAAACTATGGTTTGGACTCAACTCAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAAACGCTTTTTGGATATAGTACTCCATCAATGGAGAAAAAAGGTGGACAGAAGAAAGATCCTTCCTTCCGGGATGCTCCACCTCAGTTTACCCAAATCATTGAATCAAAGAAAGCACAAAATTTATCAATTCTGTTGAAAGCATTAAATGTGACACTTGAAGAAGTCCGTGATGCACTACTAGAAGGAAATGAGCTCCCAATAGAATTTCTTCACACCCTGATAAAGATGGCACCGACATCAGAGGAAGAACTTAAGCTTAGACTTTTCAGTGGTAGTTTATCTCAACTTGGTCCTGCAGATCGGTTCCTTAAATCTTTGGTTGAGATTCCATTTGCTTTTAAACGAATGGAAGTATTGCTTTACATGAGTACTCTTCAAGAGGAACTCACCTCTACCCGAGATTCTTTCTCAATTTTAGAGGTTGCTTGTAAGGAACTAAGGAGCAGTAGATTATTCCTCAAGCTTCTTGAAGCTGTTCTTAAAACAGGAAACCGAATGAACGATGGAACATTCCGCGGAGGTGCACTTGCGTTCAAACTTGACACACTACTAAAGTTATCCGATGTAAAAGGAGTAGATGGGAAAATCACCCTCTTACACTTTGTTGTTCAAGAGATGATGCGAACAGAAGGAATAAGAGCAGCTCGAATGGTGAAAGAGAGCGGTAGTTTCTCTAGTATAAAAACAGAGGACCTTCTCGAAGAAGTTAATCATGAATCAGAAGAACACTACCGCGAAATAGGTCTACAAGTTGTTTCACATTTGAGCAGTGATCTTGAGAATGTGAAGAAAGCGGCAGCATTAGATGCTGATGGCTTGACAAGCACAACAGCTAGATTAGGCTATGGTCTTATAAAAACAAGAGATTTCTTTAAAAACGAACTTGTGAACAACTTAGATAATGATCAAGGGTTCCATGAGATAGTTAAGTGTTTTGTGGAGAAAGCTGAGGTTGATGTCACCGGTTTGTTAGAAGAAGAGAAGAAAATCATGGCTCTTGTAAAGAGTACTGGTGATTACTTTCATGGGAGTACAGGGAGAGATGAAGGATTGAGATTGTTTGTAATAGTACGCGATTTCTTAATAATGTTGGATAAGGTGTGCAGAGAGATTCAAAAAGCACCAAAAAAGCCAATAAAGAATGTAAAACAAGACACAACAGATGCTAATTCTAAAGGGTCATCGAATGTAAAACAAGATGCAACAAATGCTAATTCTAAAGGGTCATCAAATGTAAAACAAGATACAACTAAAGCTAATTCTAAAGGGCCATCAAAGCCGGAAACTCGTCCTCCACCTCCGGATACAACTAAAGCTAATTCTAAAGGGCCATCAAAGCCGGAAACTCGTCCTCCACCTCCGGATATTCGCCAGCGGTTGTTTCCAGCAGTGGTAGAGAGGAGAGTGGATGATTTTAGTTCAGATGATGACAGTCCATAG 2961 0.4086 MVMIQQYMGVIKSVFCIVLVLNIVAVISIEEKKETEEEFVGKLFDPASEILDEDTAEILCTICMEDLIHVTKDIGDLGLCLPKESHSRTNEVTSEFRSTARENIQNLISTCSPQLKENFLNCLRKHNVPFQDQSKNWITAYEGSGSSRRYPRRVSPRYLAEKQDNDGSSKKDKSDNGSDKSSKKKSKSSDSKNKQHEKAVYNAMAMTAMVMFVIAACTFLCYCRCCGSGRVNQTDERPLLSMSRSDYSVGSSNNNSRISVKEEKHGVQSISSILVEEKKNSMKEDASRPSFDLKPPPGRVGNGKNSMKEDASRPSFDLKPPPGRVGNGIPPLKPPPGRTDPLPPEPPPVKSFDYAVNPPPPPPPPGLQMPSSSGALPPGLPKPGGGGPPPPPPPKLGNSGPKPPPPPPPRGKSGGPRPPPPPKSGAGPPRAPPPFGQKGPRPLPSGPKVQGKVEVSSEGEGEAEADDAPKTKLKPFFWDKVQANSDQTMVWTQLKAGSFQFNEEMMETLFGYSTPSMEKKGGQKKDPSFRDAPPQFTQIIESKKAQNLSILLKALNVTLEEVRDALLEGNELPIEFLHTLIKMAPTSEEELKLRLFSGSLSQLGPADRFLKSLVEIPFAFKRMEVLLYMSTLQEELTSTRDSFSILEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGALAFKLDTLLKLSDVKGVDGKITLLHFVVQEMMRTEGIRAARMVKESGSFSSIKTEDLLEEVNHESEEHYREIGLQVVSHLSSDLENVKKAAALDADGLTSTTARLGYGLIKTRDFFKNELVNNLDNDQGFHEIVKCFVEKAEVDVTGLLEEEKKIMALVKSTGDYFHGSTGRDEGLRLFVIVRDFLIMLDKVCREIQKAPKKPIKNVKQDTTDANSKGSSNVKQDATNANSKGSSNVKQDTTKANSKGPSKPETRPPPPDTTKANSKGPSKPETRPPPPDIRQRLFPAVVERRVDDFSSDDDSP 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02669 986 PANTHER FORMIN-RELATED 126 885 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vifa1g02669 986 MobiDBLite consensus disorder prediction 886 986 - -
Vifa1g02669 986 SUPERFAMILY Formin homology 2 domain (FH2 domain) 534 893 - -
Vifa1g02669 986 SMART it6_source 463 886 IPR015425 -
Vifa1g02669 986 Pfam Formin Homology 2 Domain 466 871 IPR015425 -
Vifa1g02669 986 MobiDBLite consensus disorder prediction 968 986 - -
Vifa1g02669 986 Coils Coil 545 565 - -
Vifa1g02669 986 ProSiteProfiles Formin homology-2 (FH2) domain profile. 463 897 IPR015425 -
Vifa1g02669 986 MobiDBLite consensus disorder prediction 243 470 - -
Vifa1g02669 986 MobiDBLite consensus disorder prediction 455 470 - -
Vifa1g02669 986 MobiDBLite consensus disorder prediction 891 931 - -
Vifa1g02669 986 MobiDBLite consensus disorder prediction 158 196 - -
Vifa1g02669 986 MobiDBLite consensus disorder prediction 381 441 - -
Vifa1g02669 986 MobiDBLite consensus disorder prediction 243 257 - -
Vifa1g02669 986 MobiDBLite consensus disorder prediction 324 371 - -
Vifa1g02669 986 Gene3D Formin, FH2 domain 468 912 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02669 Vifa-Chr1 419201096 419206058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02669 447 879 FH2 protein (formin) Gene Family AT5G67470 48.655 8.59e-120 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02669 - - gmx:100792872 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02669 1 419201096 419206058 Vifa1g02669 1 419201096 419206058 ECH
Vifa1g02669 1 419201096 419206058 Vifa6g01786 6 679696653 679700856 PCT