Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02662 ATGGATTTTGAACTGCGAAGAGCGAGAGAGAAGATAGAGAAAGAGCAGAAGGAAAGAAAGGAGAAAGCGAGATTGAGAGTTCTGAAGGAAAAGAAAGCCAAAGAGGATGCTCGGATTCAAAGGGAAGCCATTGAAGCTGCTCAACGATCTCGTCGTATTGATGCCGCTGAAGCTCAACTCAAGGCTGACCAAGAGATGCAAGAAAACCTACTTGCTGGGAGGGGAATTGTATTTTATCGTTTACTAGAAGCTGTCCCTTATCAAGGCATTCAATTTACTGACGAAGAGAAAACGGGAACCACCCATTCAGGAGTTTTAGAATTCACTGCCGATGAAGGTTCAGTGGGTCTTCCTCCTCATGTATGGAATAATTTGTTTTGTGAAGGTTCTATTATGGAATCTCCATTGGTTGAAGTCCGCTATGTTTGGCTTCCAAAAGGGACTTATGCGAAACTTCAACCTGAAAGAGTAGGATTTTCTGACTTGCCAAACCATAAAGCTATCCTCGAAACAAGTCTTCGGCAGCATGCTACTCTTTCTCAAGGTGACATTTTCATTGTAAACTATGGAGAACTTGAATACAAATTGAAGGTGCTTGAGTTAAAACCTTCTTCAAGTGTATCTGTTTTAGAAACAGATATTGAAGTTGACATAGTTGATCCAATTGAATTCTCAGAACAGACTCATCAACATGTTTTGATTCCAGTTGTATTTCGGACGTCACAAACCGGAACAGTAGAAGAAGGAAAGTTTGTGTATTACAAGTTTTCAATAGACAATGACACATGGGAGAAAATTTCTAGTGGGAGTTCTAGTATTGAGGTAAAATTAGAATCAGAGACAAATGAGGGAGACACTGATCTTTTCATTTCTAGACATCCTCTCATATTTCCTACACGACACCAACATGAGTGGTCTTCCCATGATATTGGATCAAAGACTTTGATTCTCAGCTCTAAAGATAAAAATTTGGCTGCGGGGACTTACAGCATTGGTGTATACGGCTTTAAAGGATCAACTGAGTACAAGCTATCAGTCACGATTCAAGATAATTTAAACCAAAAATTGGGTCAGCAAGCATCATCTTCTATGTCATCCATGGAATTGGATACTGAACAATGCAGGAATTGCAGGCATTACATACCCTCAAGGACCATTGCACTTCATGAAGCTTACTGTAGCAGGCACAATGTTACTTGCCAGCATGAAGGGTGTGGAGTTGTTCTTAGAATCGAGGAGTCCAAAAATCACATTCATTGTAACAGGTGTGGTCAAGCTTTCCAGCAGGCAGAATTGGAAAAACACATGAAAGTTTTTCACGAGCCACTTAAATGCCCTTGTGGAATAATACTTGAGAAAGAGCAAATGGTGGAACATCAAGCATCAGTTTGCCCCTTGCGACTGATTTCATGCCGGTTTTGTGGTGATATGGTTCAAGCTGGAAGTTCTGCCATGGATGTCCGTGACAGATTAAGAGGATTGTCTGAGCACGAGAGTGTTTGTGGGTCAAGGACTGCACCGTGTGATTCTTGTGGACGTTCAGTAATGTTGAAGGAGATGGACATACACCAGATTGCTGTTCATCAAAAAGGCTAA 1596 0.411 MDFELRRAREKIEKEQKERKEKARLRVLKEKKAKEDARIQREAIEAAQRSRRIDAAEAQLKADQEMQENLLAGRGIVFYRLLEAVPYQGIQFTDEEKTGTTHSGVLEFTADEGSVGLPPHVWNNLFCEGSIMESPLVEVRYVWLPKGTYAKLQPERVGFSDLPNHKAILETSLRQHATLSQGDIFIVNYGELEYKLKVLELKPSSSVSVLETDIEVDIVDPIEFSEQTHQHVLIPVVFRTSQTGTVEEGKFVYYKFSIDNDTWEKISSGSSSIEVKLESETNEGDTDLFISRHPLIFPTRHQHEWSSHDIGSKTLILSSKDKNLAAGTYSIGVYGFKGSTEYKLSVTIQDNLNQKLGQQASSSMSSMELDTEQCRNCRHYIPSRTIALHEAYCSRHNVTCQHEGCGVVLRIEESKNHIHCNRCGQAFQQAELEKHMKVFHEPLKCPCGIILEKEQMVEHQASVCPLRLISCRFCGDMVQAGSSAMDVRDRLRGLSEHESVCGSRTAPCDSCGRSVMLKEMDIHQIAVHQKG 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02662 531 Coils Coil 5 25 - -
Vifa1g02662 531 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 28 477 IPR004854 GO:0006511
Vifa1g02662 531 Gene3D - 146 219 - -
Vifa1g02662 531 Gene3D - 239 355 - -
Vifa1g02662 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 439 490 IPR013083 -
Vifa1g02662 531 Pfam Ubiquitin fusion degradation protein UFD1 92 221 IPR004854 GO:0006511
Vifa1g02662 531 Gene3D - 62 145 IPR042299 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g02662 UFD1 1e-40 CL0402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02662 - - cam:101492821 904.434