Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02659 ATGAAACTAAAAAATGGGTTACTATTGTTTCTGTTTGTGGAGTGTGCTTTTTTCAAAGTGGACTCAAAGTGTGTGAAAGGGTGTGATATAGCTTTAGCTTCTTACTATGTCATGCCTTTAGTTGATCTCCCAACTATAACAAATTTCATGCAATCAAAGATTGTTACCAACTCTTCTAATGTTTTAAATAGTTACAATAAAGTCTTAGTAACCAATCATGGTAATATTTTTTCCTATTTTAGAATCAACATTCCATTCCCATGTGAATGTATTGGAGGTGAGTTTTTAGGACATGTGTTTGAATACACAACAAAGAAAGGAGATACTTATGATTTGATTGCAAATAATTATTATGTAAGTTTGACTAGTTTTGAGCTTTTGAAAAAGTTCAATAGTTATGATCCAAATCATATACCTGCTAAGGCTAAGGTTAATGTCACTGTCAATTGTTCTTGTGGGAATAGCCAGATTTCAAAAGACTATGGATTGTTTGTTACTTATCCGTTAAGGTCTATGGATACTCTTGAGAAGATTGCGAACGAGTCTAAACTAGATGAAGGGTTGATACAGAATTTCAATCCTGATGTTAATTTCAGTAGAGGAAGTGGGATAGTGTTCATTCCAGGAAGAGATAAAAATGGAGAATATGTTCCTTTGTATCCTAGAACAGGTTTTGCTAAGGGTGCAGCTGTTGGTATATCGATAGCAGGAGTATTCGGGCTTCTATTATTTGTTATTTGTATATATGTCAAATACTTCCAGAAAAAGGAAGAAGAGAAAACTATACTGCCCCAAATTTCTAAGGTGCTTTCAACTCAAGATGGTAGTGGAGAATATGAAACTTCAGGATCTAGTGGGTATGGTACTGGTAGTGCTGCTGGGCTTACAGGAATTATGGTGGCAAAGTCAACAGAGTTTTCATATCAAGAACTAGCTAAGGCTACAAATAACTTTAGTTTGGATAATAAAATTGGTCAAGGTGGTTTCGGAGCTGTCTATTATGCCGAACTCAGAGGCGAGAAAACAGCAATTAAGAAAATGAATGTACAAGCATCAACAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTTCATCATTTGAATCTGGTGAGGTTGATTGGATATTGTGTTGAGGGATCGCTTTTCCTTGTATACGAACATATTGACAATGGAAACTTGGGTCAATATTTGCATGGTTTAGGTAAAGAGCCATTACCATGGTCTAGTAGAGTCCAAATTGCTCTAGATTCTGCAAGAGGCCTTGAATACATTCATGAACACACTGTGCCAGTTTATATCCATCGCGATGTAAAATCAGCAAACATATTGGTAGACAAAAACTTGCGGGGAAAGGTTGCAGATTTTGGCTTGACCAAACTTATTGAAGTTGGAAACTCCACACTTCACACTCGTCTTGTTGGAACTTTTGGATACATGCCACCAGAATATGCTCAATATGGTGACGTTTCTCCGAAAATAGATGTATATGCTTTTGGAGTTGTTCTTTATGAACTAATTTCTGCAAAGAATGCTGTTCTGAAGACAGGTGAAGTATCGGTTGCTGAATCAAAGGGTCTTGTAGCCTTGTTTGAAAAAGCACTTAATCAAATTGATCCTTCAGACGCTCTTTGCAAATTGGTGGATCCTAGGCTTAAAGAAAACTATCCAATTCATTCTGTTTTAAGGATGGCTGAACTTGGGAGAGCATGTACAAGAGACAATCCACTACTACGCCCAAGTATGAGATCTTTAGTTGTTGATCTCATGACACTTTCATCACCATTTGAAGATTGTGATGATGACAACTCCTATGAAAATCAAACTCTCATAAATCTATTGTCAGTGCGATGA 1854 0.3646 MKLKNGLLLFLFVECAFFKVDSKCVKGCDIALASYYVMPLVDLPTITNFMQSKIVTNSSNVLNSYNKVLVTNHGNIFSYFRINIPFPCECIGGEFLGHVFEYTTKKGDTYDLIANNYYVSLTSFELLKKFNSYDPNHIPAKAKVNVTVNCSCGNSQISKDYGLFVTYPLRSMDTLEKIANESKLDEGLIQNFNPDVNFSRGSGIVFIPGRDKNGEYVPLYPRTGFAKGAAVGISIAGVFGLLLFVICIYVKYFQKKEEEKTILPQISKVLSTQDGSGEYETSGSSGYGTGSAAGLTGIMVAKSTEFSYQELAKATNNFSLDNKIGQGGFGAVYYAELRGEKTAIKKMNVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGLGKEPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILVDKNLRGKVADFGLTKLIEVGNSTLHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKNAVLKTGEVSVAESKGLVALFEKALNQIDPSDALCKLVDPRLKENYPIHSVLRMAELGRACTRDNPLLRPSMRSLVVDLMTLSSPFEDCDDDNSYENQTLINLLSVR 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02659 617 FunFam PTI1-like tyrosine-protein kinase 3 389 603 - -
Vifa1g02659 617 SMART serkin_6 318 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02659 617 ProSiteProfiles LysM domain profile. 100 146 IPR018392 -
Vifa1g02659 617 Pfam LysM domain 102 140 IPR018392 -
Vifa1g02659 617 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Vifa1g02659 617 FunFam LysM receptor kinase 2 297 388 - -
Vifa1g02659 617 ProSiteProfiles Protein kinase domain profile. 318 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02659 617 Gene3D Phosphorylase Kinase; domain 1 298 388 - -
Vifa1g02659 617 Gene3D Transferase(Phosphotransferase) domain 1 389 612 - -
Vifa1g02659 617 SUPERFAMILY Protein kinase-like (PK-like) 300 590 IPR011009 -
Vifa1g02659 617 Pfam Protein tyrosine and serine/threonine kinase 319 588 IPR001245 GO:0004672|GO:0006468
Vifa1g02659 617 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 8 603 IPR044812 GO:0019199|GO:0045087
Vifa1g02659 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02659 Vifa-Chr1 418088156 418090933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02659 7 617 Receptor kinase-like Gene Family AT3G21630 53.485 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa1g02659 PK_Tyr_Ser-Thr 7.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02659 - K13429 tpra:123921801 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02661 1 418282045 418282942 Vifa1g02659 1 418088156 418090933 PCT