Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02648 ATGAACGTGACATTCATATTAGATAAGGTCTATCAGGGGAGTTTTTCATATGAAGAACTAGCTAATGCTACGAATAACTTCAATTTGGCTAACAAAATCGGTCAAGGAGGTTTCGGTGAAGTCTATTATGCCGTGTTGAATGGCGAGAAAGCTGCAATAAAAAAGATGGACATGAAAGCATCAAAAGAATTTCTTGCTGAGCTTAAGGTGTTGACGCGTGTTCATCACTTGAACTTGGTACGGTTGATTGGATATTGCGTCGAAGGATCGCTTTTCCTTGTGTACGAATACATTGATAATGGAAACTTAAGTCAACATCTTCGCAGTTCAGATGGAGAACCTTTGTCATGGGTGGCCAGGGCTAAAATTGCTCTGGATTCAGCAAGAGGTCTTGAATACATTCACGAACATACCGTGCCTACTTATATTCATCGTGACATAAAGTCAGAAAACATTTTGTTAGACAAGAACTTCTGTGCTAAGGTTGCAGATTTTGGATTAACCAAGCTGATTGACGCTGGAAGTTCATCGGTTCCTACTGCTAATATGGCAGGCACATTTGGTTACATGCCACCAGAATATGCATATGGTAGTGTTTCTTCCAAAATAGATGTATATGCTTTCGGAGTTGTTCTTTATGAACTAATTTCTGCTAAAGGAGCAGTGATAATGGGTGGTGAATCTGGTGCAGATTTAAAAGGCCTTGTAGTTTTGTTTGATGAAGTTTATGACCAACCAAATCCTATAGAAGTTTTAAAGATGGCACAACTTGCAAAAGCATGCACAGAAGGTGATCCACAAAAGCGTCCAAATATGAGCTATGTTGTAGTTGCTCTGACTACATTAACTTCAACAACTGAGGAATGGGATATCACTTCTATATACAAAAATCCAAATCTTGTAAATTTAATGTCAGGAAGATAG 924 0.3853 MNVTFILDKVYQGSFSYEELANATNNFNLANKIGQGGFGEVYYAVLNGEKAAIKKMDMKASKEFLAELKVLTRVHHLNLVRLIGYCVEGSLFLVYEYIDNGNLSQHLRSSDGEPLSWVARAKIALDSARGLEYIHEHTVPTYIHRDIKSENILLDKNFCAKVADFGLTKLIDAGSSSVPTANMAGTFGYMPPEYAYGSVSSKIDVYAFGVVLYELISAKGAVIMGGESGADLKGLVVLFDEVYDQPNPIEVLKMAQLAKACTEGDPQKRPNMSYVVVALTTLTSTTEEWDITSIYKNPNLVNLMSGR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02648 307 Pfam Protein tyrosine and serine/threonine kinase 28 278 IPR001245 GO:0004672|GO:0006468
Vifa1g02648 307 PRINTS Tyrosine kinase catalytic domain signature 250 272 IPR001245 GO:0004672|GO:0006468
Vifa1g02648 307 PRINTS Tyrosine kinase catalytic domain signature 95 108 IPR001245 GO:0004672|GO:0006468
Vifa1g02648 307 PRINTS Tyrosine kinase catalytic domain signature 203 225 IPR001245 GO:0004672|GO:0006468
Vifa1g02648 307 PRINTS Tyrosine kinase catalytic domain signature 136 154 IPR001245 GO:0004672|GO:0006468
Vifa1g02648 307 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vifa1g02648 307 FunFam LysM receptor kinase 2 5 97 - -
Vifa1g02648 307 PIRSF ILK 11 297 - -
Vifa1g02648 307 ProSitePatterns Protein kinases ATP-binding region signature. 33 55 IPR017441 GO:0005524
Vifa1g02648 307 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 14 293 IPR044812 GO:0019199|GO:0045087
Vifa1g02648 307 Gene3D Phosphorylase Kinase; domain 1 12 97 - -
Vifa1g02648 307 FunFam PTI1-like tyrosine-protein kinase 3 98 293 - -
Vifa1g02648 307 SUPERFAMILY Protein kinase-like (PK-like) 12 279 IPR011009 -
Vifa1g02648 307 Gene3D Transferase(Phosphotransferase) domain 1 98 299 - -
Vifa1g02648 307 SMART serkin_6 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02648 307 ProSiteProfiles Protein kinase domain profile. 27 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02648 Vifa-Chr1 416971072 416973227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02648 15 307 Receptor kinase-like Gene Family AT3G21630 64.309 9.25e-136 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa1g02648 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02648 - K13429 mtr:11432279 515.768