Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02646 ATGGTTTCGCCGGAAAACACCAATTGGCTTTTCGATTATGCTTTGATTGACGATATTCCCGTCTCTGATGGCTCCTTCGCCTTCACGTGGCCACCGTCACATCCTCTCAATGTCTGTGTTGATATGGATGGTTCTCTGGGAGATTCTGATGGTATCAAAGATCCTGGTTCAAAGAAGAGAGGTAGATCAGATTCGTCTGCTCCTTCCAGCTCTAAGGCATGTCGAGAGAAGCAGCGGAGGGATAGGCTGAACGATAAGTTTGTTGAATTAGGCTCTATCTTGGAGCCTGGAAGGCCACCAAAAACAGACAAGGCAGCAATTCTGACTGATGCTGTCCGAACGGTATCACAGTTGCGGGGTGAAGCCCAGAAGTTGAAAGACTCTAATTCAAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGTTGAGAAGAATGAACTCCGCGATGAGAAGCAGAGGCTTAAGGCTGAGAAAGAGAAGCTGGAGCAGCAGGTGAAGTCAATGAATGCACAACCCAGTTTCTTGACACACCCTCCTGCAATGCCTGCTGCATTTGCTCCACAAGGCCAAGCCCATAGTAACAAGCTAATGCCTTTCATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCCTCCGTGGATACCTCACAGGATCATGTTCTCCGTCCACCAGTTGCCTAA 687 0.4789 MVSPENTNWLFDYALIDDIPVSDGSFAFTWPPSHPLNVCVDMDGSLGDSDGIKDPGSKKRGRSDSSAPSSSKACREKQRRDRLNDKFVELGSILEPGRPPKTDKAAILTDAVRTVSQLRGEAQKLKDSNSSLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNAQPSFLTHPPAMPAAFAPQGQAHSNKLMPFMSYPGVAMWQFMPPASVDTSQDHVLRPPVA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02646 228 FunFam Transcription factor bHLH34 58 116 - -
Vifa1g02646 228 Gene3D - 58 116 IPR036638 GO:0046983
Vifa1g02646 228 Gene3D arf6 gtpase in complex with a specific effector, jip4 117 171 - -
Vifa1g02646 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 118 IPR011598 GO:0046983
Vifa1g02646 228 MobiDBLite consensus disorder prediction 47 82 - -
Vifa1g02646 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 143 IPR036638 GO:0046983
Vifa1g02646 228 PANTHER BHLH TRANSCRIPTION FACTOR 4 228 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vifa1g02646 228 Coils Coil 115 170 - -
Vifa1g02646 228 CDD bHLH_AtILR3_like 72 147 - -
Vifa1g02646 228 Pfam Helix-loop-helix DNA-binding domain 71 118 IPR011598 GO:0046983
Vifa1g02646 228 SMART finulus 73 124 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02646 Vifa-Chr1 416609082 416611157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02646 1 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.967 2.35e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g02646 HLH 3.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02646 - - ccaj:109815088 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02646 1 416609082 416611157 Vifa1g02646 1 416609082 416611157 ECH
Vifa1g02646 1 416609082 416611157 Vifa6g01764 6 673115341 673117941 PCT