Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02638 ATGGCATGTCCAACATTCCTAACACTAATCATCCTCACAACAATTTCCCTTGTCTTCATCCCCAAAACACTATCCCAACAAGAATATGTTGGTCTCAAACAACCAGATTGTGAACACACATACAACTCAACACTAGGCAACATTTGCAACAGCGTCAACTCATGTCAATCTTACCTCACCTTCAAATCAAACCCCCCATACAACACACTCTCTTCCATTTCCAACCTTCTCAACTCTTCACCTTCCCTCCTCTCCCAATCCAACAACATCTCCACCCTCCAAACCATCCCCAACGACACCATCCTAACCGTCCCCGTTACCTGTTCCTGCACCGGCAACAACAAATACTACCAACATAACTCTACCTACGCTTTGAACATCCTCGGTGAAACCTATTTCTCCGTCGCTAATTACACCTACCAGACTCTTACCTCATGTCAAGCTCTTATCGCTCAGAATCCTTACGCTATTCGAAACCTCACTGTTGGTCTCAACCTAACAGTTCCTCTCAGATGTGCTTGTCCCACCAAGAAACAGACTGATCAAGGCTTCAAGTATCTTCTCACCTACTTGATCTCTGATGGTGATACGCTTTCTTCCATTGCTGATATTTTCGGAGTTGATCAACAAAGCATTCTTGATGCTAACGAGCTTTCTTCTACTTCCACTATTTACGCTTTCTCACCCATTTCAATCCCTCTCAAAACCGAACCACCCAAAAAAATAACAAGAGCAGCTTCACCGCCCGAGTCTCCTCCACCTCCACCGCCAAAAGATGGTGGTTCCTCCTCTTCCAAGAAATGGGTCATCGTCGGTGTCGTGGTTGGGGTTGTTGTTTTGCTTCTGGTGATTCTTGCTATATTTTTCCTCTGTTTCTATAAACGGCAGCAGCCGCCTCCGAAGCTGCCACCCCCGGAGGTTCAGCAATTATGGGACTCTAACGCCAAGAAGACTACCTCAACAACTCAATCTTGGTCTCTTTCTTCTGAGGGGATTCGCTATGCCGTGGACTCCTTGACTAAGTTCAAGTTTCAAGATTTGCAGAATGCAACCATGTTTTTCAGTGAAGAGAACAAGATTAAGGGTTCTGTTTATAGAGCTTCGTTTAAAGGGGATGCTGCGGCTGTTAAGATTCTGAAAGGTGATGTTTCTTCTGAGATAAACATTTTGAAGAGGATTAACCATGCCAATATTATAAGGTTGTCTGGTTTTTGTGTTTACAAAGGTAATACTTATCTTGTTTATGAGTTTGCTGAGAACAACTCTCTTGACGATTGGATTCACTCTGAGGATTCGAATACTACGTGTTTGAGTTGGTTTCAGAGAGTTCAGATTGCTCATGATGTTGCTGATGCACTTAATTACCTTCATAATTATGCTAATCCACCTCATGTTCATAAGAATTTGAAAAGTGGTAGTATTCTTTTAGATGGAAAATTTAGAGGTAAAGTTTCGAATTTTGGGTTGGCAAGAGTTATGGAGAATGAAGATAATGAAGGGTTTCAATTAACAAGACATGTAATAGGGACTCAAGGTTACATGGCACCTGAATATATTGAGAATGGTTTGATTACTCCAAAGATGGATGTTTTTGCATTTGGTGTTGTGATTTTGGAGCTTCTTTCTGGAAGAGAGGTTGTTGGTAGCGACAAGAATAATGGTTTGGGGGATCAGCTTTTATCTTCAACTGTGAATCAGGTTCTTGAAGGGGAAAATGATAGGGAGAAGCTTAGAGGTTTCATGGATCCAAATTTGAGAGATCAATACCCTTTGGATCTTGCATATTCTATGGCTGAGATTGCCAAAAGATGTGTTCATCGTGATCTGAATTCAAGACCAAATGTTTCGGAGGTTTTCATGGTTCTGTCTAAGATTCAGTCCTCTACATTAGACTGGGATCCATTGTCTAGATCTGTTAGCCAAGTTTCTGATAGTTGA 1938 0.418 MACPTFLTLIILTTISLVFIPKTLSQQEYVGLKQPDCEHTYNSTLGNICNSVNSCQSYLTFKSNPPYNTLSSISNLLNSSPSLLSQSNNISTLQTIPNDTILTVPVTCSCTGNNKYYQHNSTYALNILGETYFSVANYTYQTLTSCQALIAQNPYAIRNLTVGLNLTVPLRCACPTKKQTDQGFKYLLTYLISDGDTLSSIADIFGVDQQSILDANELSSTSTIYAFSPISIPLKTEPPKKITRAASPPESPPPPPPKDGGSSSSKKWVIVGVVVGVVVLLLVILAIFFLCFYKRQQPPPKLPPPEVQQLWDSNAKKTTSTTQSWSLSSEGIRYAVDSLTKFKFQDLQNATMFFSEENKIKGSVYRASFKGDAAAVKILKGDVSSEINILKRINHANIIRLSGFCVYKGNTYLVYEFAENNSLDDWIHSEDSNTTCLSWFQRVQIAHDVADALNYLHNYANPPHVHKNLKSGSILLDGKFRGKVSNFGLARVMENEDNEGFQLTRHVIGTQGYMAPEYIENGLITPKMDVFAFGVVILELLSGREVVGSDKNNGLGDQLLSSTVNQVLEGENDREKLRGFMDPNLRDQYPLDLAYSMAEIAKRCVHRDLNSRPNVSEVFMVLSKIQSSTLDWDPLSRSVSQVSDS 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02638 645 SUPERFAMILY LysM domain 188 233 IPR036779 -
Vifa1g02638 645 Gene3D Phosphorylase Kinase; domain 1 313 417 - -
Vifa1g02638 645 ProSiteProfiles Protein kinase domain profile. 350 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02638 645 Gene3D LysM domain 188 244 IPR036779 -
Vifa1g02638 645 MobiDBLite consensus disorder prediction 236 264 - -
Vifa1g02638 645 CDD LysM 189 226 IPR018392 -
Vifa1g02638 645 MobiDBLite consensus disorder prediction 245 260 - -
Vifa1g02638 645 Pfam LysM domain 192 233 IPR018392 -
Vifa1g02638 645 ProSiteProfiles LysM domain profile. 188 232 IPR018392 -
Vifa1g02638 645 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 10 634 - -
Vifa1g02638 645 SUPERFAMILY Protein kinase-like (PK-like) 331 619 IPR011009 -
Vifa1g02638 645 Gene3D Transferase(Phosphotransferase) domain 1 418 634 - -
Vifa1g02638 645 Pfam Protein kinase domain 381 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02638 645 SMART LysM_2 58 105 IPR018392 -
Vifa1g02638 645 SMART LysM_2 189 233 IPR018392 -
Vifa1g02638 645 FunFam PTI1-like tyrosine-protein kinase 3 418 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02638 Vifa-Chr1 414945136 414947073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02638 1 634 Receptor kinase-like Gene Family AT2G33580 51.813 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa1g02638 Pkinase 4.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02638 - - tpra:123921078 875.93