Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02637 ATGTCATGTCCAACGTTAATAACACTGCTCATCTTTTCCTTCATCTCAAACACAATCTCCCAACAAGAATACGTTAACAACAAACAACTAGATTGTGAAAACAACTACAACTCAACATCAGGCAACGTTTGCAACAGCGTCAATTCATGTCAATCATACCTCACCTTCCAATCAAACCCCCCATACAACACACTCTCTTCCATTTCCAACCTCCTCAACGCTTCACCTTCCCTCATCTCCCAATCCAACAACATCTCCACCCTCCAAACCATCCCAACGGACACCATCCTAACCGTCCCCGTTACCTGTTCATGTACCGGCAACAAAAACTACTACCAACACAACACTTCCTACACTCTGAAAACCGTCGGTGAAACCTACTTCGCCGTCGCTAATCTCACCTACGAGGCTCTCACCACCTGTCAAGCTCTTATCGCTCAGAATCCTTACCCTATTCGAAACCTCACTGTTGGTCTCAAACTAACTGTTCCTCTCAGATGTGCTTGTCCCACTAAGAAACAGAGAGATCAAGGAATCAAGTATCTTCTCACCTACTTGGTCTCTCAAGGTGAATCAGTTTCTATAATAGCTGATATTTTCGGCGCTGATCCACAAACCGTTATTGAAGCTAACAAGCTTTCTCCTGCTGCAAATATTTTCTACTTCACACCGCTTTTAGTCCCTCTCAAAAACGAACCACCCAAAAATATTATCAAACAAGCTTCACCGCCGGAGTCTCCGCCGCCGCCTCCACCAGCGAATCCTGGGGATAGTGGTTCTTCCTCTTCTAAGAAATGGGTCATCATTGGTGTCGCGGTTGGGGTTGTTGTTTTGCTTTTAGTGCTTCTTTCTCTGTTTTTCTTCTGTTTCTATAAGCAGAAGCGGCGGCAACCGGAACTACCACCACCGGTGGGTAAACCTTTCTCAGATTCCGACAACATGAAGATTTCAGATACTACCTCCACAACTCAATCTTGGTCTCTTTCTTCTGAGGGGATTCGTTATGCAGTTGACTCGTTGACTCAGTACAAGTTTCAAGATTTGCAGAATGCAACCATGTTTTTCAGTGAAGAGAACAAGATTAAGGGTTCTGTTTATAGAGCTTCGTTTAAAGGGGATGCTGCGGCTGTTAAGATTCTGAAAGGTGATGTTTCTTTTGAGATAAACATTTTGAAGAGGATTAACCATGCCAATATTATAAGGTTGTCTGGTTTTTGTGTCTACAAAGGTAACACTTATCTTGTTTATGAGTTTGCTCAGAATAACTCTCTTGATGAATGGCTTCACTCTGAGAACAAGAACAAGAATTATGAGAATTCGAATACTACGTGTTTGAGTTGGTTTCAGAGAGTTCAGATTGCTCATGATGTTGCTGATGCACTTAATTACCTTCATAATTATGCTAATCCACCCCATGTTCATAAGAATTTGAAAAGTGGTAATATTCTTTTGGATGAGAAATTTAGAGGTAAAGTTTCAAATTTTGGGTTGGCTAGAGTTATGGAGAATGAAGATAATGAAGGGTTTCAATTAACAAGACATGTAATAGGAACTCAAGGTTACATGGCACCTGAATATATTGAGAATGGTTTGATTACTCCAAAGATGGATGTTTTTGCATTTGGTGTTGTGATTTTGGAGCTTCTTTCTGGAAGAGAGGTTGTTGGTGGTGACAAGAATAATGGTTTGGGAGATCAACTTCTTCTGTCTTCAACTGTGAATCAAGTTCTTGAAGGGGAGAATGTTAGGGAGAAGCTTAAAGGTTTCATGGATCCAAATTTAAGAGATGAATACCCTTTGGATCTTGCATATTCAATGGCTGAGATTGCTAAAAGATGTGTTCATGGTGACCTGAATTCAAGACCAAATGTTTCGGAGGTTTTCATGGTTTTGTCTAAGATTCAGTCCTCTACATTAGACTGGGATCCATCTGATGAACTTGAAAAGTCCAGATCTGTTAGTCAAGTTTCTGATAGTTAG 1980 0.4091 MSCPTLITLLIFSFISNTISQQEYVNNKQLDCENNYNSTSGNVCNSVNSCQSYLTFQSNPPYNTLSSISNLLNASPSLISQSNNISTLQTIPTDTILTVPVTCSCTGNKNYYQHNTSYTLKTVGETYFAVANLTYEALTTCQALIAQNPYPIRNLTVGLKLTVPLRCACPTKKQRDQGIKYLLTYLVSQGESVSIIADIFGADPQTVIEANKLSPAANIFYFTPLLVPLKNEPPKNIIKQASPPESPPPPPPANPGDSGSSSSKKWVIIGVAVGVVVLLLVLLSLFFFCFYKQKRRQPELPPPVGKPFSDSDNMKISDTTSTTQSWSLSSEGIRYAVDSLTQYKFQDLQNATMFFSEENKIKGSVYRASFKGDAAAVKILKGDVSFEINILKRINHANIIRLSGFCVYKGNTYLVYEFAQNNSLDEWLHSENKNKNYENSNTTCLSWFQRVQIAHDVADALNYLHNYANPPHVHKNLKSGNILLDEKFRGKVSNFGLARVMENEDNEGFQLTRHVIGTQGYMAPEYIENGLITPKMDVFAFGVVILELLSGREVVGGDKNNGLGDQLLLSSTVNQVLEGENVREKLKGFMDPNLRDEYPLDLAYSMAEIAKRCVHGDLNSRPNVSEVFMVLSKIQSSTLDWDPSDELEKSRSVSQVSDS 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02637 659 ProSiteProfiles LysM domain profile. 183 227 IPR018392 -
Vifa1g02637 659 MobiDBLite consensus disorder prediction 640 659 - -
Vifa1g02637 659 SMART LysM_2 53 100 IPR018392 -
Vifa1g02637 659 SMART LysM_2 184 228 IPR018392 -
Vifa1g02637 659 MobiDBLite consensus disorder prediction 236 259 - -
Vifa1g02637 659 Pfam Protein kinase domain 383 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02637 659 ProSiteProfiles Protein kinase domain profile. 351 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02637 659 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 7 644 - -
Vifa1g02637 659 MobiDBLite consensus disorder prediction 240 256 - -
Vifa1g02637 659 Gene3D Transferase(Phosphotransferase) domain 1 419 653 - -
Vifa1g02637 659 Gene3D Phosphorylase Kinase; domain 1 315 418 - -
Vifa1g02637 659 FunFam PTI1-like tyrosine-protein kinase 3 419 645 - -
Vifa1g02637 659 Pfam LysM domain 185 228 IPR018392 -
Vifa1g02637 659 MobiDBLite consensus disorder prediction 297 320 - -
Vifa1g02637 659 SUPERFAMILY Protein kinase-like (PK-like) 334 628 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02637 Vifa-Chr1 414759112 414761091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02637 9 653 Receptor kinase-like Gene Family AT2G33580 52.799 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa1g02637 Pkinase 3.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02637 - - tpra:123921078 943.34