Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02634 ATGGATCAACATCATCATCATCATCATCATCATATGATGAACAATATGGAAACTAGTAATAGGAAGTTTCTTTCTTTCCCTCTCAACAATAACAACTCTTCTGGTGTTCAAGATCATCAGCATCATAACTTTACACACCAAAACAACAACAATAACAACAGTACAAGTGTTGTTGTTAGGGATAAAATCATGGCTCATCCTCTCTTTCCTCGTCTCTTGTCTTCTTACCTCAATTGCTTGAAGGTTGGAGCACCACCTGAAGTGGTGGCTAGCTTAGAAGAATCATGTGCAAAATGTGAAATATTGAATGGCTCTTCCGGAAGGACAGGAACTAGTTCTTGTATAGGTGAAGATCCAGGTTTGGATCAGTTCATGGAAGCATACTGTGAGATGCTTATTAAGTATGAGCAAGAACTCACTAAACCTTTCAAAGAAGCCATGCTTTTCCTTTCAAGAATTGAGTCCCAGCTTAAGGCTCTTGCTGTTTCAACTGACTTTGGTCAAAGTGAACCACCATCAATGAATGAGATTGATGTTCATGAGAACAACTTCGATACTCAAGGTGAAGATCAAGAATTAAAAGTGCAGCTGTTGCGCAAGTATAGTGGATATCTCGGCAGTCTCAAGAAAGAGTTTTTGAAGAAGAAAAAGAACGGAAAGTTACCAAAGGAAGCTCGTCAACAACTACTCGATTGGTGGAACCGGCATTACAAATGGCCTTATCCATCGGAATCTCAAAAACAAGCACTTGCAGAATCGACAGGGCTAGATTTGAAGCAGATCAACAACTGGTTCATTAATCAGAGAAAGCGTCACTGGAAACCTTCTGAGGATATGCAATTTGCTGTGATGGATGCCACAAACTACTACATGGAAAATGTAATGTGCAAACCATTTCCCATGGATGCCATGCCTATGCTTCTTTAG 927 0.3991 MDQHHHHHHHHMMNNMETSNRKFLSFPLNNNNSSGVQDHQHHNFTHQNNNNNNSTSVVVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCEILNGSSGRTGTSSCIGEDPGLDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKALAVSTDFGQSEPPSMNEIDVHENNFDTQGEDQELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDAMPMLL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02634 308 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 108 282 - -
Vifa1g02634 308 SMART HOX_1 214 279 IPR001356 GO:0003677
Vifa1g02634 308 MobiDBLite consensus disorder prediction 23 53 - -
Vifa1g02634 308 Pfam ELK domain 192 213 IPR005539 GO:0003677
Vifa1g02634 308 SUPERFAMILY Homeodomain-like 214 286 IPR009057 -
Vifa1g02634 308 CDD homeodomain 224 276 IPR001356 GO:0003677
Vifa1g02634 308 SMART KNOX1_2 57 101 IPR005540 GO:0003677|GO:0005634
Vifa1g02634 308 SMART ELK_2 192 213 IPR005539 GO:0003677
Vifa1g02634 308 Pfam Homeobox KN domain 232 271 IPR008422 GO:0003677|GO:0006355
Vifa1g02634 308 ProSiteProfiles ELK domain profile. 192 212 IPR005539 GO:0003677
Vifa1g02634 308 ProSiteProfiles 'Homeobox' domain profile. 212 275 IPR001356 GO:0003677
Vifa1g02634 308 Pfam KNOX1 domain 59 100 IPR005540 GO:0003677|GO:0005634
Vifa1g02634 308 Gene3D - 210 283 - -
Vifa1g02634 308 Pfam KNOX2 domain 114 160 IPR005541 GO:0003677|GO:0005634
Vifa1g02634 308 ProSitePatterns 'Homeobox' domain signature. 250 273 IPR017970 GO:0000981|GO:0006355
Vifa1g02634 308 SMART KNOX2_2 111 162 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02634 Vifa-Chr1 413749929 413752531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02634 59 302 Homeobox Transcription Factor Family AT1G62360 67.054 1.67e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vifa1g02634 KNOX2 8.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02634 - - mtr:11431352 483.411