Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02609 ATGAAATTTATTAAGGAAGCTAAGACTTCCTCGTACAAAAAGACATATATCTTAATATTCTCATTGTTGTTTGTGTTGTCCGGTTTTGATATCTGTGATGGACAAGATGACGTTGCAACACCGCCACCGCCCGTTGCTGAACTCGACAATTGTGACGGAATATTTCTAACGTATGCTTTAACTGGAAGGGAGAAGGAATATCCGCACGTGAAGAACGTTACGAAACAAGCGTGGGCGTTTAAAGCCGAAGTTTCGTTGATGAATGTTGGAGATGAGGAACTGAGAGATTGGAAGATGTATATTGGGTTTCAGCATAGGGAGATTCTTGTTTCGGCGGATGGAGCTGTTCCGGTTGACTCGGAGGATTTTCCGGCCGAGGTAGGGAATGGTACTACAATTGCTGGAAATCCTATGACAGATTTGAAAACTGCCATAGAAACAGCTGGTGATTATAATCAAATGGCTGTTAGGGTTAAAATGAGTGGAACTCAGTTTGGACTTGGTGCAGGTGCTTCTCCTATGCCTAAAACTATTAAGCTTATGAATGATGGCTTCAAATGCCCTCAACCTGGTCGCAGAGGTTCAAGAATGTTTGTATGCTGCAAAAAGGACCCAAAAGTTAAAGCTAGCCTAAAAAAGAAAACAAAGTTCCTTCCCCGTCGCTATGGCGATCTAACCATAGCGTACGATGTTCTTCAAGCCTTTCATACCAGCTACTACGCGCAAGTAACCATAGACAACAATCATCCATTAGGCCGTCTTGATCATTGGAACATAACATGGGAATGGCAAAAAGGAGAATTCATTAACACTCTAAAAGGTGCTTATGCTCGGATAAAAGACCCTTCTGAATGTTTATACGGTCCGGCCGGAAGATACTACGGTGACTTAGATTTCTCAACAGTTGCAAACTGTCAAAAGAAACCTATTCTCTCCGATCTTCCGACTGAAAGAGCAGAAGATGAAAAAGTTGGTAAAGTACCTTGGTGTTGTAGGAATGGTACTGTTTTACCACCTCTTATGGATAAGAACAAGGCAAGATCAATTTTTCAGTTACAAGTTTTCAAATCGCCACCTGATGATAACAGAACAGCACTTACACCACCAATAAAATGGCACATTGATGGTGTTATTAACCCTAAATACAAATGTGGACCACCAATTAGGGTTGATGCACAAGAATTTCCTGATCCTAGTGGACTTACAGCCATTTCAACAGCTGTTGCTAGTTGGCAGATAGTTTGCAACATTACGAAACCGAAGCCGAAAGAAAATCGTTGTTGCGTTTCGTTCTCAGCTTTCTATAATGAATCTGCTATCCCTTGTAACACATGTGCTTGCGGTGGTTGTGACGATACAAGGAAATGTAATCCTAATGCTTCGCCTTTACTTCTTCCACCCGACGCACTTCTCGTCCCTTTCGAGAATCGAACATTAAAGGCACGCGCTTGGGCGAAACTCAAACACATGCGCGTTCCAAGTAAGTTACCTTGTGGAGATCATTGTCCTGTTAGTATTAACTGGCATGTAAGTTCAGATCATAAGGAGGGATGGACAGCTAGGATAACGATTTTCAATTGGGAGAATTTCGGCTTCGAAGATTGGTTCGCCGCGCTTAAGTTCGACAGGTCTTTCGAAGATTTTCAAGATGTTTATTCATTTAATGGGACGAGAATTCCCGGTATCAAAACCCTTTTCTTTCAAGGACTTAAAGGTTTGAATTACTTAGCCGGAGAAACTAATGGAACTCGTACTAAAGATCCAAGAGTGCCAGGGAAACAACAATCTGTGGTTTCTTTTCATAAGAAATACACTAAAGAATTCAACGTCGTGCGCGACGCTTTTCCTTCTAAGGTGTACTTCAATGGAATGGAATGTGCACTTCCTCCACATAGACCTGCTAAAGGTTCAGGACATAAATCTTCTATCAGCATCATCGTAGTCATTTTTACAGCATTTATGACATTCTTGCTCACGACAGATCACTTTTTCTGA 1995 0.416 MKFIKEAKTSSYKKTYILIFSLLFVLSGFDICDGQDDVATPPPPVAELDNCDGIFLTYALTGREKEYPHVKNVTKQAWAFKAEVSLMNVGDEELRDWKMYIGFQHREILVSADGAVPVDSEDFPAEVGNGTTIAGNPMTDLKTAIETAGDYNQMAVRVKMSGTQFGLGAGASPMPKTIKLMNDGFKCPQPGRRGSRMFVCCKKDPKVKASLKKKTKFLPRRYGDLTIAYDVLQAFHTSYYAQVTIDNNHPLGRLDHWNITWEWQKGEFINTLKGAYARIKDPSECLYGPAGRYYGDLDFSTVANCQKKPILSDLPTERAEDEKVGKVPWCCRNGTVLPPLMDKNKARSIFQLQVFKSPPDDNRTALTPPIKWHIDGVINPKYKCGPPIRVDAQEFPDPSGLTAISTAVASWQIVCNITKPKPKENRCCVSFSAFYNESAIPCNTCACGGCDDTRKCNPNASPLLLPPDALLVPFENRTLKARAWAKLKHMRVPSKLPCGDHCPVSINWHVSSDHKEGWTARITIFNWENFGFEDWFAALKFDRSFEDFQDVYSFNGTRIPGIKTLFFQGLKGLNYLAGETNGTRTKDPRVPGKQQSVVSFHKKYTKEFNVVRDAFPSKVYFNGMECALPPHRPAKGSGHKSSISIIVVIFTAFMTFLLTTDHFF 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02609 664 Pfam COBRA-like protein 239 418 IPR006918 GO:0010215|GO:0016020
Vifa1g02609 664 PANTHER COBRA-LIKE PROTEIN 7 15 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02609 Vifa-Chr1 409591897 409594008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02609 16 661 COBRA Gene Family AT3G20580 59.447 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02609 - - gmx:100789175 1033.86