Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02597 ATGCAACGAGCTAGTGATCTTCTTTTTGGTGTTTCAATGTTCGCTGAGCCAATCAGCATTAAAATCATTGATCGGACGAGTTCAGCTATGAATGAATTGTGCAATATCGGAATTAGAGGTAAACCTTTATGGCATCAACATAATTCAGATCGATACGAAAGTCTTAACAACATTGAATATTTAAAATATTCTGGTTGTGTCGATGCGACGTTAATGAATATTGTTAAATTGGCCGAGGTCGGAAAACTTCAAGCTTTACCTAGCTTTGATCCGTATGGAAATCAGATCAATTCAATGTCAAATGAAAATTTCGTACGAGGTCTACAAATTGAAGCTTCGCGAGATACGACAATGGTTAACGCCGGTCCGAATGACATTGTTGAATTACTTATGAATGTGAATCAATGGTGGATGACATTTCACAACATTGTTTCAAGAGCAACGATTCTTGGAAGCTTTATGAATGGAGTAGAAGGAAGCTATGATGGGAGATTGCATGTGATGAACGCGGAATTTCACTTGCCTAGTCCTGTTGTACCGACTCGAGAGTGTTGTTTTGCTAGATACTGCAAACAATTCTCTCCGAACGACTGGGCTGTTGTTGATGTATCTTTGGAGGATCTTTTCCCTTATCCATCTAACAATTTTCAAAAAAGACCTTCAGGTTGTTTGATTAAAGGAATGCCTAATGGAGGCTCTAAGGTTACATGGGTGGAGCATGTGGAAGCTGATCATAGCCAATTGAATGATCTTTTCAAGCCATTAGTTACCTCTGGTTTGGCTTTTGGTGCAACGCGGTGGCTAGCTTCCCTTGTTCGACACTTTGAATGGTCTGAAACACTTAAGACTACACAATTTTTCACAGACGGGAATGCTTTTATACCTCAAATTGGAAGGACAAGTTTCTTGAAACTGGCTGACAGAATGATGAGAAAATTTTGTGCTAATCTTAGCGCTACAACGACTAATCCATGGATGCGATTGGCTCCATTTCCTGGTTCAACCGATGTTAGAGTTATGATTCAGAATAATATGCCTGGCACTTCAAATAATCCTGTTGGAACAACAATAGTTTTTAGTACTACTATTTGGCTTAATATCTCTCCAAATCAATTATTCAACTTCCTTCGCCACGAGAAATCCAGAAACAAGTGGGATATACTTTCAAAATCACTTTCAATTCAACAATTTGCATGCATGACCATCGGCGAACATCTAGAGAATCGTGTTTCTTTGCTGCGAGCAAGTAATTCTAAGGACAAGACTGAAATCTTTTACCTACAAGAGAGTTACGCAGACGAAACTGCTTCCTACGTGATTTATGCTCCGCTAGACGAATCAGCGTTGATTCATCTTGCAAAAGGATCCAGCCCAGACAATGTAATTGCATTTCCTTCCGGGTTTGCGATTATTCCTGGAGGGTTACCGAAAGATAAAGGCAATAATACTAGTCGCAATGAAAGTCTTCTTACTATCTCATTTAATCTGATTGATAAAGCCAGCAATATTACAAGTATCCCTCCTGAATCAGTTCAAACTATCTATGGGATTATTACAGAAATTGTTACTGCTATTAAGGATGCATTATCGTGTCATAGTCGACTCAACAATTGGGTACAAGATGAGTTGAAAAAAGGCCCGGTGAAGAAATAG 1653 0.3902 MQRASDLLFGVSMFAEPISIKIIDRTSSAMNELCNIGIRGKPLWHQHNSDRYESLNNIEYLKYSGCVDATLMNIVKLAEVGKLQALPSFDPYGNQINSMSNENFVRGLQIEASRDTTMVNAGPNDIVELLMNVNQWWMTFHNIVSRATILGSFMNGVEGSYDGRLHVMNAEFHLPSPVVPTRECCFARYCKQFSPNDWAVVDVSLEDLFPYPSNNFQKRPSGCLIKGMPNGGSKVTWVEHVEADHSQLNDLFKPLVTSGLAFGATRWLASLVRHFEWSETLKTTQFFTDGNAFIPQIGRTSFLKLADRMMRKFCANLSATTTNPWMRLAPFPGSTDVRVMIQNNMPGTSNNPVGTTIVFSTTIWLNISPNQLFNFLRHEKSRNKWDILSKSLSIQQFACMTIGEHLENRVSLLRASNSKDKTEIFYLQESYADETASYVIYAPLDESALIHLAKGSSPDNVIAFPSGFAIIPGGLPKDKGNNTSRNESLLTISFNLIDKASNITSIPPESVQTIYGIITEIVTAIKDALSCHSRLNNWVQDELKKGPVKK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02597 550 CDD START_ArGLABRA2_like 27 276 - -
Vifa1g02597 550 ProSiteProfiles START domain profile. 15 280 IPR002913 GO:0008289
Vifa1g02597 550 SMART START_1 67 277 IPR002913 GO:0008289
Vifa1g02597 550 SUPERFAMILY Bet v1-like 297 473 - -
Vifa1g02597 550 SUPERFAMILY Bet v1-like 106 276 - -
Vifa1g02597 550 Gene3D - 99 275 IPR023393 -
Vifa1g02597 550 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 529 IPR042160 -
Vifa1g02597 550 Pfam START domain 105 274 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02597 Vifa-Chr1 408242321 408245035 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02597 1 531 Homeobox Transcription Factor Family AT4G04890 39.194 5.84e-110 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02597 K09338 - jre:108992281 463.381