Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02590 ATGGATTTGAGCAACTCCAAGTATCTTATAGAGACTCCAGAGTTTTTTTGGACCCCAAAAATCAAGCGGCTAGATTTTACAGGATGCACAAACTTAATACAGGTCCATTCATCAATTGGATATCTTACAGAACTTGTTTTCGTAAGTTTTCAAAACTGCAGCAGTTTGGTTGACCTTGATTTTGGTAGTGTATCAAGATTAAGTTCTTTGAGAGTTCTACGCCTTTCTGGTTGTACAAAACTTGAAAAGATGCCTGCTTTTACCGGCGCATCTAATCTTGAGTACCTTGATATGGATGAATGTACAACTTTATCCAAAGTTCATGAACCCATTGGGGATTTGACAAACCTTAAATTCTTGAGTTTGAGAAACTGCACAAATCTGGTTGAAATGCCTGATAGAATTAAGAGGATGGCATCCGTTGTAACGCTAGATTTTTGCGGTTGCTTGAGTCTTAGCATTCTACCCCTGAAATGTACTCGTACTGATCATATGAGATCTTTGATTTTTCTAGATTTAAGCTTTTGCAATCTTCATGAAGTACCAGATACTATTGGAACGTTAAAGACGTTAGAAAGACTAAACCTACAAGGAAACAAATTCCGTTCACTACCTGATGTTTTCAACATTCTTCCCAACATAGCATATGTAAACTTATCTCATTGCCACGAGCTTGAAACTGTTGAATTCCAACCTTTAATTAGTGCTTTTTCTGAAGGAAGGTATTTTAATGGAGGAACATATTTTGACATAGCAGCAGGATCTCGTGATCATAGATCTGGATTATATATATTTGACTGCCCCAAGATCATGAAGATGAGCATAAACCTAACCATGGGATATAGATGGTTTCGAAGACTGCATGAGAATCCCCAAAACTTTCGGGGTGGCTTTGACATCGTTATTCCTTGGGATTGGAAAAATATTGATCATCCATCAAGTGGATGTACTCTAAAGTGGTTCAATCACCAATTTGATGGCGGTTCAATAATAAGGATAGTGGATTTTGATGAGTTTTACAAGAATTTTGGCTTTGCCTTCTATGTTTCATTTGAGGAGGAAATTGAGAATTCTGGAGCCAAGTCAAAAGAAATCGATCTTTCTAATCTGGGCCTTGAGTGA 1122 0.3734 MDLSNSKYLIETPEFFWTPKIKRLDFTGCTNLIQVHSSIGYLTELVFVSFQNCSSLVDLDFGSVSRLSSLRVLRLSGCTKLEKMPAFTGASNLEYLDMDECTTLSKVHEPIGDLTNLKFLSLRNCTNLVEMPDRIKRMASVVTLDFCGCLSLSILPLKCTRTDHMRSLIFLDLSFCNLHEVPDTIGTLKTLERLNLQGNKFRSLPDVFNILPNIAYVNLSHCHELETVEFQPLISAFSEGRYFNGGTYFDIAAGSRDHRSGLYIFDCPKIMKMSINLTMGYRWFRRLHENPQNFRGGFDIVIPWDWKNIDHPSSGCTLKWFNHQFDGGSIIRIVDFDEFYKNFGFAFYVSFEEEIENSGAKSKEIDLSNLGLE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02590 373 SUPERFAMILY L domain-like 3 228 - -
Vifa1g02590 373 ProSiteProfiles Leucine-rich repeat profile. 190 211 IPR001611 GO:0005515
Vifa1g02590 373 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 163 228 - -
Vifa1g02590 373 Pfam Leucine rich repeat 171 223 IPR001611 GO:0005515
Vifa1g02590 373 Gene3D Ribonuclease Inhibitor 89 232 IPR032675 -
Vifa1g02590 373 Gene3D Ribonuclease Inhibitor 1 88 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02590 Vifa-Chr1 406949983 406951740 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02590 1 226 WRKY Transcription Factor Family AT4G12020 33.628 1.07e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02590 - - lja:Lj3g3v1556600.1 355.525