Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02588 ATGGCTTCTACCAGCAACAACTGCTCCTCCTCTCGAGTCTGTAAATACGACGTGTTCCTCAGTTTCCGAGGCACCGACACTCGCAACAATTTCACCGATCATCTCTATCACCATCTTATCAGAAAAGGTATTTCCGTCTTCAAAGACGATCAGACCCTCCAGAAAGGAGAATCCATTTCACCGCAGCTTCTACAAGCAATTCGAGATTCAAGGGTTTCTCTAGTTGTTTTCTCACGAAACTATCCTCGGTCAACATGGTGTTTGAATGAAATGGCTGCTATTGCGGAATGCCACAGAGAATTCAAACAAACTGTTATCCCTATTTTCTACGGTATCGATCCATCTCATGTTCGGAAGCACATTGGGGTTTTCAAAATTGATTTTAATAACTCAAACAAGAAGTTCAAGTGCGATCCAGACAAGGTTGATGGATGGGAGAGAGCTATGACTGAATTGGCCAATTTGGTTGGATTTGATGTTAGAGACAAGACAGAGTTTACAGAGATTGAAAAAATTGTTCAAGCAGTAATAAAAGCATTGAAACATAAATTCTCAGGGTTTACCAGTGACCTTGTTGGGATGCAATATCGCATACAAGAATTAGAAAAGCTTCTAAAATTGAGTTCAAAGCATGACGACTTCCGAGTTCTGGGAATTTGCGGGATGGGTGGAGTAGGAAAGACAACTCATGCCACTGTTTTGTATGACAGAATATCTTATCAGTTTGATGCTCGTTGTTTTATTAATAACACAAGCAAACTTTATATGGATGGTGGTATTGTTGCTGTACAAAAACAAATTCTTCGTCAAACTCTAGCCGAAAGTAATCTAGACTCATACGATACTTGTGAAATCGCCGGAATTATGTTAAATAGGCTTCACAGTGGCCTTAAGGTCCTTCTATTTCTTGACAATGTTGATCAATTAGAGCAACTGCAGGAATTGGGTATAAATCCTAAATTACTATGGAGTGGTAGTAGAATAATCATAACCACAAGAGACGAGCATATTTTAAGAGTTTATGGGGCAGATAGAGTACACAAAGTTCCCATGTTGAATAGTAATGATGCCTGTGAACTTTTTCGTAGAACAGCCTTCAAAGGTGAAGACCAAAGCAGCGATTGTGTGGAGTTGATTCCAGAGATACTAAAATATGCTCAAAATCTCCCATTAGCAATTAAAGTAGTGGGCTCTTTCTTGTGTACCCGAGATGCTACTCAGTGGACCGATGCTTTGGATAGATTGAAGAACAATCCCGACAGTAAAATTATGGATGTGCTTCAGATGAGTGTTGATGGACTACAACATGAAGAGAAGGAGATCTTTTTGCACATTGCTTGTTTCTTTAAAGGGGAGAGGGAAGATTATGTTAAGCGAATTCTAGATGCTTGTGGATTACACCCTCACATTGGAATTCAAAGAATCCTTGAGAAATCTCTAATTATCATTAAAAACCAAGAGATTCATATGCATGATATGTTACAAAAACTGGGCAAGAAAATCGTCCGGCACCGGTTTCCTGAAGAGCCAGGATCGTGGAGTAGATTATGGAATTACCATGATTTCTATCAAGTATTGACAACAGAAACGGGAACAAACAGTGTTAAAGCTATAGTTCTGGATCAAAAGGAAAGTTTCTCCAACTGCAGGGCTGAAGGATTTTCATATATGAGGAACCTTGCACTTCTCATATTGTATCATAACAACTTTTCAGGAAATTTGGATTTTCTTTCCAACAACTTGCGATATCTTTTGTGGCATGGATGCCCTTTTACTTCTTTGCCGTCAAATTTTGAGCCATATTATCTTGTGGAATTGAATATGCCTGATAGTAGCATTCAACGACTGTGGGAAGGTCGCAAGGAACTACCTAATTTGAAGAGGATGGATTTGAGCAACTCCAAGTATCTTATAGAGACTCCAAAGTTTTTTTGGACCTCAAAACTGGAGCGGTTAGATTTTACAGGATGCACAAACTTAATACAGGTCCATCCATCAATTGGACATCTTACCGAACTTGTTTTCTTATGTTTGCAAAACTGCAGCAGTTTGGTTGACCTTGATTTTGGTAGTGTATCAAGATTAAGTTCTTTGAGAGTTCTACGCCTTTCTGGTTGTACAAAACTTGAAAAGACACCAGATTTTATCAGCGCATCAAATCTTGAGTACCTTGATATGGATGAATGTACAACTTTATCCAAAGTTCATGAATCCATTGGGGATTTGACAAACCTTAAATTCTTGACTTTGAGAAACTGCACAAATCTGGTTGAAATGCCCGATAGAATTAAGAGGATGGCATCCCTTGTAACTCTAGATTTTTGCGGTTGCTCGAGTCTTACAATTCTACCCCTGAAATGGACTCCTACTGATCATATGAGATCTTTGATTTTTTTAGATTTAAGCTTTTGCAATCTTCATGAAGTACCTGATATTGGAACGTTAAAGACGCTAGAAAGACTAAACCTACAAGGAAACAAATTTCGTTCACTACCTTATGGTTCCAATGATCTTCAAAACCTAGCATATGTAAACTTATCTCATTGCCATGAGCTTGAAACTATTGAACTACCTTTAATTAGTGCTTCTTCTGGAGGAAGATATTTTAACATAGCAGTGGGATCTCGTGATCATAGGTCAGGATTATACATAATTGACTGCCCCAAGATCATGAACATTACTGGAAACCAAATCATAGAATATATATGGTTTCGAAGACTGCATGAGAATCCCCAACACTTTCGGGGTGGCTTTGACATTGTTGTTCCTGTTTTTCCATCAAGTAGTTGTATTCCAAGATGGTTCAATCACCAATTTGATGGCGGTTCAATAGTAAGGATAGTAGATTTTGATGAGTTTGACAAGAAGTTTGGCTTTGCCTTCTGTGTGGCATTTGAGGTAAACAATTGTCCTGCGAATACTTGTTCTCCTCCACAGGATTCATTTTTCTCAGCACTCCCACATCCTTTATATCTTTCTTTTGAAAGTGAACACACAGAGGAACGCTTTGATATGCCACTCAGTTTGGATTTGAACAAAATTGATGGCTCCAAACATCTTTGGCTAATCTATATCTCTCAAGAGCATTGCCATTTTGTAAAAACTGGAGCGCATATCACATTTAAAGCCTGCCAAGGTTTGTCCATAAAGAAATGGGGATTGCGCTTGTTAATCAAGAATAAAGAATCATATCCGGCCCCTAGCTCCTGGGAACACTTATTGGACTATTATATGCCCCAACTTTTCTTAGACTATGTACAAAAAACCAGCATGAAGTCTGGAACTAAAATCCAACTTCCATACAATTGGTTGGTTACTGAAGACGAAGAAGTTGAGAATTCTGGAGCCAAGTCAAAAGAAACCGATCTTTCTAATCTCGGCCTTTAG 3387 0.3865 MASTSNNCSSSRVCKYDVFLSFRGTDTRNNFTDHLYHHLIRKGISVFKDDQTLQKGESISPQLLQAIRDSRVSLVVFSRNYPRSTWCLNEMAAIAECHREFKQTVIPIFYGIDPSHVRKHIGVFKIDFNNSNKKFKCDPDKVDGWERAMTELANLVGFDVRDKTEFTEIEKIVQAVIKALKHKFSGFTSDLVGMQYRIQELEKLLKLSSKHDDFRVLGICGMGGVGKTTHATVLYDRISYQFDARCFINNTSKLYMDGGIVAVQKQILRQTLAESNLDSYDTCEIAGIMLNRLHSGLKVLLFLDNVDQLEQLQELGINPKLLWSGSRIIITTRDEHILRVYGADRVHKVPMLNSNDACELFRRTAFKGEDQSSDCVELIPEILKYAQNLPLAIKVVGSFLCTRDATQWTDALDRLKNNPDSKIMDVLQMSVDGLQHEEKEIFLHIACFFKGEREDYVKRILDACGLHPHIGIQRILEKSLIIIKNQEIHMHDMLQKLGKKIVRHRFPEEPGSWSRLWNYHDFYQVLTTETGTNSVKAIVLDQKESFSNCRAEGFSYMRNLALLILYHNNFSGNLDFLSNNLRYLLWHGCPFTSLPSNFEPYYLVELNMPDSSIQRLWEGRKELPNLKRMDLSNSKYLIETPKFFWTSKLERLDFTGCTNLIQVHPSIGHLTELVFLCLQNCSSLVDLDFGSVSRLSSLRVLRLSGCTKLEKTPDFISASNLEYLDMDECTTLSKVHESIGDLTNLKFLTLRNCTNLVEMPDRIKRMASLVTLDFCGCSSLTILPLKWTPTDHMRSLIFLDLSFCNLHEVPDIGTLKTLERLNLQGNKFRSLPYGSNDLQNLAYVNLSHCHELETIELPLISASSGGRYFNIAVGSRDHRSGLYIIDCPKIMNITGNQIIEYIWFRRLHENPQHFRGGFDIVVPVFPSSSCIPRWFNHQFDGGSIVRIVDFDEFDKKFGFAFCVAFEVNNCPANTCSPPQDSFFSALPHPLYLSFESEHTEERFDMPLSLDLNKIDGSKHLWLIYISQEHCHFVKTGAHITFKACQGLSIKKWGLRLLIKNKESYPAPSSWEHLLDYYMPQLFLDYVQKTSMKSGTKIQLPYNWLVTEDEEVENSGAKSKETDLSNLGL 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02588 1128 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 182 - -
Vifa1g02588 1128 PRINTS Disease resistance protein signature 293 307 - -
Vifa1g02588 1128 PRINTS Disease resistance protein signature 216 231 - -
Vifa1g02588 1128 PRINTS Disease resistance protein signature 386 400 - -
Vifa1g02588 1128 PRINTS Disease resistance protein signature 621 637 - -
Vifa1g02588 1128 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 710 IPR044974 GO:0006952
Vifa1g02588 1128 Gene3D Ribonuclease Inhibitor 542 718 IPR032675 -
Vifa1g02588 1128 Gene3D Ribonuclease Inhibitor 719 900 IPR032675 -
Vifa1g02588 1128 ProSiteProfiles TIR domain profile. 14 180 IPR000157 GO:0007165
Vifa1g02588 1128 Pfam NB-ARC domain 200 420 IPR002182 GO:0043531
Vifa1g02588 1128 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 158 IPR035897 -
Vifa1g02588 1128 Gene3D - 351 435 IPR042197 -
Vifa1g02588 1128 Gene3D - 181 345 IPR027417 -
Vifa1g02588 1128 SUPERFAMILY L domain-like 554 861 - -
Vifa1g02588 1128 SMART till_3 15 155 IPR000157 GO:0007165
Vifa1g02588 1128 Pfam C-JID domain 929 1061 IPR045344 -
Vifa1g02588 1128 Gene3D - 9 180 IPR035897 -
Vifa1g02588 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 445 IPR027417 -
Vifa1g02588 1128 Pfam TIR domain 15 184 IPR000157 GO:0007165
Vifa1g02588 1128 SUPERFAMILY "Winged helix" DNA-binding domain 421 526 IPR036390 -
Vifa1g02588 1128 Pfam Leucine Rich Repeat 602 619 IPR011713 -
Vifa1g02588 1128 SMART AAA_5 213 352 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02588 Vifa-Chr1 406881332 406887557 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02588 16 858 WRKY Transcription Factor Family AT4G12020 30.173 1.38e-86 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02588 - - var:108332841 1289.63