Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02587 ATGCAACAACAAGTGGCATCAGAAGTTCAACACCACCAACTGAAAAAAAAGAACCAAGAAACACAGATGTGTAGAAAAATCAAACTCAGCATCACTGATCACAACAACCTCAAACTCACAACCACCGTTGATAACGATGACGGTGATGTTTGTGACAAGATAGACGGCGAGGATCTCTTCATTCCACCTCTCAATTTTTCCATGGTTGATAATGGCATTTTCCGTTCTGGTTTCCCTGAACCTTCCAACTTCTCTTTCCTTCAAACCCTTGGTCTTCGCTCCATCATATATTTGTGCCCTGAACCATATCCAGAAGCTAACATGGAGTTTCTCAAGTCAAATGGAATCAAGCTTTATCACTTTGGAATTGAGGGTCATAAGGAGCCTTTTGTTAACATCCCGGACGATACTATTCGGGAAGCCCTAAAAGTTCTTCTTGATGTGAGGAACCACCCAGTTATAATTCACTGTAAGCGAGGAAAGCACCGAACAGGTTGTTTGGTCGGATGCTATAGAAAGCTCCAAAAATGGTGCTTGTCGTCTGTTTTTGACGAGTATCAACGTTTTGCAGCTGCGAAAGCTCGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCAAGCATGAAGCATTTGCCTATACCATTTTCATATTTAAAGAGGTAA 669 0.4126 MQQQVASEVQHHQLKKKNQETQMCRKIKLSITDHNNLKLTTTVDNDDGDVCDKIDGEDLFIPPLNFSMVDNGIFRSGFPEPSNFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYHFGIEGHKEPFVNIPDDTIREALKVLLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSMKHLPIPFSYLKR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02587 222 PANTHER TYROSINE-PROTEIN PHOSPHATASE 31 211 - -
Vifa1g02587 222 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 61 207 IPR029021 -
Vifa1g02587 222 ProSiteProfiles Dual specificity protein phosphatase domain profile. 65 216 IPR020422 GO:0006470|GO:0008138
Vifa1g02587 222 PRINTS Plant and fungal dual specificity phosphatase signature 116 130 IPR020428 GO:0016791
Vifa1g02587 222 PRINTS Plant and fungal dual specificity phosphatase signature 60 77 IPR020428 GO:0016791
Vifa1g02587 222 PRINTS Plant and fungal dual specificity phosphatase signature 133 147 IPR020428 GO:0016791
Vifa1g02587 222 PRINTS Plant and fungal dual specificity phosphatase signature 97 110 IPR020428 GO:0016791
Vifa1g02587 222 Pfam Tyrosine phosphatase family 61 212 IPR004861 -
Vifa1g02587 222 Gene3D Protein tyrosine phosphatase superfamily 59 209 IPR029021 -
Vifa1g02587 222 CDD PFA-DSP_Siw14 59 206 - -
Vifa1g02587 222 FunFam probable tyrosine-protein phosphatase At1g05000 59 209 - -
Vifa1g02587 222 ProSitePatterns Tyrosine specific protein phosphatases active site. 155 165 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02587 Vifa-Chr1 406366524 406369002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02587 56 222 Protein tyrosine phosphatase (PTP) family AT4G03960 76.647 4.86e-98 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02587 K18045 - gmx:100814279 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02587 1 406366524 406369002 Vifa1g02587 1 406366524 406369002 ECH