LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g02586	ATGGCAGAGAGCTCTGTTGAATTAGGCAAATTGGTTGGATTCGATGTTAGAGATAAGCCAGAGTCTATGGAGATTGAAACAATAGTTCAAGCAGTAATAAAGTCTTTCAATCATAAATTCTCAGGGTTTACCAGCGATCTTGTTGGGATGCAACATCGCATAGAAGAATTAGAAAAGCTTCTAAACTTGAGCTCAAAGGATGATGACTTCATAGTTTTGGGAATTTGGGGGATGGGTGGAGTAAGAAAGACAACTCATGCTACTGTTTTGAACATATGTATGAATCGTAGTTGGATGAGAGCTAATCGATTAAGTGCTGAGTACGAATATGGAGTGAAGGAATTTCTACCGTTTGCTGAAACCTTCAAAGGTGAAGAACAAAGTAGCAATTGTGTTGAGTTGATTCCAGAGATTCTAGAATATGCTCGAAATCTTCCATTAGCAATTAAAGTAGTGGGCTCTTTCTTGTGTACTCGAGATGCTACTCAGTGGGGAGATGCTTTGGATAGATTGAAGAACAATCCAGACAGTAAAATTATGGATTTGCTCCAGATGAGTGTTGAAGGACTACAACATGAGGAGAAGGAAATATTTCTGCGCATTGCTTGTTTTTTTAAAGGGGAGAGGGAAGATTATGTAAAGAGAATTCTAGATGCATGTGGATTATACCCTCAAATAGGAACTCAAAGAGTCATTGAGAAGTCACTCATTACCATTAAAAACCAAGAGATTCATATGCATGATATGTTACAAGAACTAAGGAAGAAAATTGTTCGGCACAACTTTCTCGAAGACCCAGTACCGTGGAGTAGATTATGGCGATACAAGGATTTTTATCGTGTTTTGAAGACAAAAAAAGGGAATATGCCTGATTATTTGAGGTTAAGGTTCTGTCGTGAAGCTGATCAGGTGAAAGAAGACATGATAGGTACTGTTATTTCTTATTTCCTCAAATTTCCAAATTCTCAATTCTTACTTTCATCGGTGATGATTGAATCTAAGGCTACTAGATTCGCCGTTGCGCGAGAAGCTGTCATTGCTACTTTAACAACAAATAATCAACCGCCTCTTTCTGCGTCACAGAATGTCATAGATCATGGAGCAGTAGTTTTTCTACATCCAACTCAGGTTCAAGCTTCATAA	1143	0.3815	MAESSVELGKLVGFDVRDKPESMEIETIVQAVIKSFNHKFSGFTSDLVGMQHRIEELEKLLNLSSKDDDFIVLGIWGMGGVRKTTHATVLNICMNRSWMRANRLSAEYEYGVKEFLPFAETFKGEEQSSNCVELIPEILEYARNLPLAIKVVGSFLCTRDATQWGDALDRLKNNPDSKIMDLLQMSVEGLQHEEKEIFLRIACFFKGEREDYVKRILDACGLYPQIGTQRVIEKSLITIKNQEIHMHDMLQELRKKIVRHNFLEDPVPWSRLWRYKDFYRVLKTKKGNMPDYLRLRFCREADQVKEDMIGTVISYFLKFPNSQFLLSSVMIESKATRFAVAREAVIATLTTNNQPPLSASQNVIDHGAVVFLHPTQVQAS	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g02586	380	Gene3D	-	32	101	IPR027417	-
	Vifa1g02586	380	Gene3D	-	116	191	IPR042197	-
	Vifa1g02586	380	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	10	94	IPR044974	GO:0006952
	Vifa1g02586	380	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	43	200	IPR027417	-
	Vifa1g02586	380	SUPERFAMILY	"Winged helix" DNA-binding domain	177	283	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g02586	Vifa-Chr1	406222187	406228960	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g02586	130	333	WRKY Transcription Factor Family	AT5G45050	30.732	3.97e-23	99.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g02586	-		-	ccaj:109817829	255.758