Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02583 ATGTACAAACGTAGATTCAACACTAAGCCAGTGTATGTTACTGACCCTGATGAGCCTGAGCCTGAGCCCGAGCCCATATTGGAAGATGGGCCTGCTTCTCCTTCTTGTGAAGACGCAAAAATTGAAGAACCTTCGCCTAAGAAAAGGAGGGAGATGAAGAAGAGGGTGGTGACTATACCGATTGCTGACGTGGAAGGATCTAAGAACAAAGGAGAGACATATCCACCGTCGGATTCATGGGCTTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCTCCTTATCCCAGGGGCTATTATCGATGTAGCAGTTCAAAAGGGTGTCCCGCTAGGAAACAAGTTGAGCGAAGCCGCGTGGACCCCACAAAGCTTGTCGTAACCTACGCCCACGACCACAACCACTCCCTCCCTCTTCCCAAATCTCATTCATCTTCTTCCGCGGTCGTAACCGCCATCGTCGAATCTCCATCTCCATCTCCCGGCGACTCCTCCGGCGAATGTAACACTAATACTGCTTCTCCCGACGCTACTTCTCAGCCGGAGAATCTAACCGTTTTCGCCACTGACTTCGACCTCTCCGGTGATTCAACGGTTCTGCTCAGCCACCACCACCACCATGCCGTGTTTGGCTGGTTCGACGACGTTGCATCTACCGGAGTCTTTGTAAGTCCGATCTGCGGAGGAGTGGAAGATGTAACGCTGACGATGAGGGAGGAGGATGAATCGCTGTTTGCAGATCTCGGTGAGTTGCCGGAGTGTTCGACGGTGTTTCGGAAGAGGAACATTCCGAGCGCGATTCAGTGTAGTGGCATCACAGGATAA 822 0.5195 MYKRRFNTKPVYVTDPDEPEPEPEPILEDGPASPSCEDAKIEEPSPKKRREMKKRVVTIPIADVEGSKNKGETYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVVTYAHDHNHSLPLPKSHSSSSAVVTAIVESPSPSPGDSSGECNTNTASPDATSQPENLTVFATDFDLSGDSTVLLSHHHHHAVFGWFDDVASTGVFVSPICGGVEDVTLTMREEDESLFADLGELPECSTVFRKRNIPSAIQCSGITG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02583 273 MobiDBLite consensus disorder prediction 40 58 - -
Vifa1g02583 273 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 31 255 IPR044810 GO:0003700
Vifa1g02583 273 MobiDBLite consensus disorder prediction 138 180 - -
Vifa1g02583 273 Gene3D WRKY domain 63 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g02583 273 SMART WRKY_cls 76 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g02583 273 FunFam WRKY transcription factor 65 62 137 - -
Vifa1g02583 273 SUPERFAMILY WRKY DNA-binding domain 72 137 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g02583 273 Pfam WRKY DNA -binding domain 78 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g02583 273 MobiDBLite consensus disorder prediction 133 180 - -
Vifa1g02583 273 ProSiteProfiles WRKY domain profile. 77 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g02583 273 MobiDBLite consensus disorder prediction 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02583 Vifa-Chr1 405702095 405705152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02583 31 267 WRKY Transcription Factor Family AT3G58710 52.756 6.26e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g02583 WRKY 1.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02583 - - cam:101504205 400.593