Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02581 ATGCCAGAAAATCGGCAGGTTTTCAAGAATGCTGGTTCTAATCCATCTGGTGATAACATTGAAGAAGCGTTTCGGCGTTTGAAAATCAATAGTAATCGGGAGAGGGATGCTGCGGCTCAATCGATGCCTTATCCGGATCGACCTGGTGAACCTGACTGCTTATATTATTTGAGGACTGGAATGTGTGGTTACGGGAGTAACTGTCGCTATAATCACCCTGCTAATGTTTCACTTGTTACTCAATATGGTGAAGAACTTCCGGAGAGAGTAGGGCAGCCTGATTGTGAGTATTTTCTTAAGACAGGAACATGCAAGTACGGATCGACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCGCCCGTTGTATTCAATACTTTAGGTCTTCCGATGCGACAGGAAGAAAAATCGTGTCCCTATTACATGAGAACCGGGTCTTGTAAGTTTGGAGTTGCTTGTAAGTTTCATCATCCACAGCAGGCGGCGGCGGCTTCCTTTGGAGCTTACCCAGCGGCTGCTTCCCCTCCCCCCACAACTGTTACTTCATCAGGTTTTCCATATGCTGGCGGCTTTCCTGCATGGTCGGTTCCGAGAATGTCGTATTTATCTGGACAGGGCATTCAATCTTATGTGCCTCCTTTTATGCCTTCTACACAAAGCATTATGCCTGCGCTGAGCTGGAGCAACTACATGGGAAGTATTAGCCCCGCAGTGCCTACCGGTTTTCTCGGATCTAATCTCGTATATGACTACATGAATCCGGCGGGAGATACACTTTCTGGTGGACAGGTAGTGAATTCGTTTCTTCCGGATAGACCTGATCAACCGGAATGTAAATACTTTATGAGCACCGGAACATGCAAATATGGATCTGATTGCAAGTTCCACCACCCGAAAGAAAGAATAGGCCAATCATTGTCCATTAATCCACTTGGCCTTCCCATGAGACCTGGGAATGCTATATGCTCATATTACAGAATCTATGGAGTATGCAAGTTTGGTCCAACATGCAAATTTGATCATCCAGTTGTAGCTATCCCTCAGAACTACGCTTTACCCTCGCCTACTCTATCAGTATTCGACGCATCTCTTCTTAATACTCCAAGAAGGATATCGACTGTCCAACAAGCCGAGACATCTCCGTCGAAACAATCAACTGACAAGCTTCAACAATCCGACACAAAAGCTGCCACCGAAGAAGACTCATCTAAACAAGCTGACAACACTTCATCAAATTCTCGCACACCTCCGTCCGAGTCCGAGTCTTTACACGACTAA 1284 0.4595 MPENRQVFKNAGSNPSGDNIEEAFRRLKINSNRERDAAAQSMPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHPANVSLVTQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVVFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQAAAASFGAYPAAASPPPTTVTSSGFPYAGGFPAWSVPRMSYLSGQGIQSYVPPFMPSTQSIMPALSWSNYMGSISPAVPTGFLGSNLVYDYMNPAGDTLSGGQVVNSFLPDRPDQPECKYFMSTGTCKYGSDCKFHHPKERIGQSLSINPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHPVVAIPQNYALPSPTLSVFDASLLNTPRRISTVQQAETSPSKQSTDKLQQSDTKAATEEDSSKQADNTSSNSRTPPSESESLHD 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02581 427 MobiDBLite consensus disorder prediction 405 420 - -
Vifa1g02581 427 ProSiteProfiles Zinc finger C3H1-type profile. 318 346 IPR000571 GO:0046872
Vifa1g02581 427 SUPERFAMILY CCCH zinc finger 278 303 IPR036855 GO:0046872
Vifa1g02581 427 Gene3D - 45 120 - -
Vifa1g02581 427 Gene3D - 273 350 - -
Vifa1g02581 427 SUPERFAMILY CCCH zinc finger 319 345 IPR036855 GO:0046872
Vifa1g02581 427 MobiDBLite consensus disorder prediction 374 394 - -
Vifa1g02581 427 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Vifa1g02581 427 Gene3D - 121 172 - -
Vifa1g02581 427 ProSiteProfiles Zinc finger C3H1-type profile. 274 302 IPR000571 GO:0046872
Vifa1g02581 427 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Vifa1g02581 427 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Vifa1g02581 427 SMART c3hfinal6 318 345 IPR000571 GO:0046872
Vifa1g02581 427 SMART c3hfinal6 274 301 IPR000571 GO:0046872
Vifa1g02581 427 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Vifa1g02581 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Vifa1g02581 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 301 IPR000571 GO:0046872
Vifa1g02581 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Vifa1g02581 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 322 344 IPR000571 GO:0046872
Vifa1g02581 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Vifa1g02581 427 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Vifa1g02581 427 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Vifa1g02581 427 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Vifa1g02581 427 PANTHER PROTEIN PHOSPHATASE RELATED 31 370 - -
Vifa1g02581 427 MobiDBLite consensus disorder prediction 374 427 - -
Vifa1g02581 427 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Vifa1g02581 427 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02581 Vifa-Chr1 404496717 404499935 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02581 1 410 C3H Transcription Factor Family AT1G04990 44.988 2.60e-114 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g02581 zf-CCCH 9.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02581 - - vra:106765262 661.373