Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02580 ATGCCAGAAAATCGGCAGGTTTTCAAGAATGCTGGTTCTAATCCATCTGGTGATAACATTGAAGAAGCGTTTCGGCGTTTGAAAATCAATAGTAATCGGGAGAGGGATGCTGCGGCTCAATCGATGCCTTATCCGGATCGACCTGGTGAACCTGACTGCTTATATTATTTGAGGACTGGAATGTGTGGTTACGGGAGTAACTGTCGCTATAATCACCCTGCTAATGTTTCACTTGTTACTCAATATGGTGAAGAACTTCCGGAGAGAGTAGGGCAGCCTGATTGTGAGACAGGAACATGCAAGTACGGATCGACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCGCCCGTTGTATTCAATACTTTAGGTCTTCCGATGCGACAGGAAGAAAAATCGTGTCCCTATTACATGAGAACCGGGTCTTGTAAGTTTGGAGTTGCTTGTAAGTTTCATCATCCACAGCAGGCGGCGGCGGCTTCCTTTGGAGCTTACCCAGCGGCTGCTTCCCCTCCCCCCACAACTGTTACTTCATCAGGTTTTCCATATGCTGGCGGCTTTCCTGCATGGTCGGTTCCGAGAATGTCGTATTTATCTGGACAGGGCATTCAATCTTATGTGCCTCCTTTTATGCCTTCTACACAAAGCATTATGCCTGCGCTGAGCTGGAGCAACTACATGGGAAGTATTAGCCCCGCAGTGCCTACCGGTTTTCTCGGATCTAATCTCGTATATGACTACATGAATCCGGCGGGAGATACACTTTCTGGTGGACAGGTAGTGAATTCGTTTCTTCCGGATAGACCTGATCAACCGGAATGTAAATACTTTATGAGCACCGGAACATGCAAATATGGATCTGATTGCAAGTTCCACCACCCGAAAGAAAGAATAGGCCAATCATTGTCCATTAATCCACTTGGCCTTCCCATGAGACCTGGGAATGCTATATGCTCATATTACAGAATCTATGGAGTATGCAAGTTTGGTCCAACATGCAAATTTGATCATCCAGTTGTAGCTATCCCTCAGAACTACGCTTTACCCTCGCCTACTCTATCAGTATTCGACGCATCTCTTCTTAATACTCCAAGAAGGATATCGACTGTCCAACAAGCCGAGACATCTCCGTCGAAACAATCAACTGACAAGCTTCAACAATCCGACACAAAAGCTGCCACCGAAGAAGACTCATCTAAACAAGCTGACAACACTTCATCAAATTCTCGCACACCTCCGTCCGAGTCCGAGTCTTTACACGACTAA 1272 0.4623 MPENRQVFKNAGSNPSGDNIEEAFRRLKINSNRERDAAAQSMPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHPANVSLVTQYGEELPERVGQPDCETGTCKYGSTCKYHHPKDRRGAAPVVFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQAAAASFGAYPAAASPPPTTVTSSGFPYAGGFPAWSVPRMSYLSGQGIQSYVPPFMPSTQSIMPALSWSNYMGSISPAVPTGFLGSNLVYDYMNPAGDTLSGGQVVNSFLPDRPDQPECKYFMSTGTCKYGSDCKFHHPKERIGQSLSINPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHPVVAIPQNYALPSPTLSVFDASLLNTPRRISTVQQAETSPSKQSTDKLQQSDTKAATEEDSSKQADNTSSNSRTPPSESESLHD 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02580 423 MobiDBLite consensus disorder prediction 401 416 - -
Vifa1g02580 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 157 IPR000571 GO:0046872
Vifa1g02580 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 297 IPR000571 GO:0046872
Vifa1g02580 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 112 IPR000571 GO:0046872
Vifa1g02580 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 318 340 IPR000571 GO:0046872
Vifa1g02580 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Vifa1g02580 423 PANTHER PROTEIN PHOSPHATASE RELATED 31 366 - -
Vifa1g02580 423 SUPERFAMILY CCCH zinc finger 315 341 IPR036855 GO:0046872
Vifa1g02580 423 Gene3D - 39 95 - -
Vifa1g02580 423 ProSiteProfiles Zinc finger C3H1-type profile. 130 158 IPR000571 GO:0046872
Vifa1g02580 423 MobiDBLite consensus disorder prediction 370 390 - -
Vifa1g02580 423 ProSiteProfiles Zinc finger C3H1-type profile. 96 113 IPR000571 GO:0046872
Vifa1g02580 423 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Vifa1g02580 423 SUPERFAMILY CCCH zinc finger 274 299 IPR036855 GO:0046872
Vifa1g02580 423 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Vifa1g02580 423 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Vifa1g02580 423 SUPERFAMILY CCCH zinc finger 129 158 IPR036855 GO:0046872
Vifa1g02580 423 SMART c3hfinal6 89 112 IPR000571 GO:0046872
Vifa1g02580 423 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Vifa1g02580 423 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Vifa1g02580 423 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Vifa1g02580 423 SMART c3hfinal6 132 157 IPR000571 GO:0046872
Vifa1g02580 423 Gene3D - 96 166 - -
Vifa1g02580 423 Gene3D - 269 346 - -
Vifa1g02580 423 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Vifa1g02580 423 MobiDBLite consensus disorder prediction 370 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02580 Vifa-Chr1 404496717 404499935 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02580 1 406 C3H Transcription Factor Family AT1G04990 44.056 7.36e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g02580 zf-CCCH 9.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02580 - - vra:106765262 647.121