Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02576 ATGGCTCGAGTGAAAGGCGCACCCCGCGTAGATCGAACCCCGGTTCCCGGCCCGAACCCTCATGCGTTACCGGAAATTCGCTACCGCGGCGTTCGGAAGCGGCCATGGGGCCGATACGCGGCGGAGATAAGAGATCCGTGGAAGAAAGCCCGTGTCTGGTTAGGCACTTTTGATTCTGCAATTCAGGCGGCCCGGGCTTACGACACAGCTGCTATCTCCTTCCGCGGCGACAAGGCGAAGACCAATTTCCCTATCCCTGAGGTTATTGCGGTTCTGCGTCCTCTTCCTCCTCCACCACCTCCGGATAACCGTAGGGCGAATGCACCGGTGCTTGCGAGAGCAGACAATACGGTTTATATGAATTATCCTACTTCGAGCGGGATGAGTAGTACCGTGGAGTCCTTCAGTGGACCAAGGGTTGGTTCTTCTTCAACCTCGAGGGTTCCTGTGTTTGTTCCGGTTAATCCTAGACCGGTTGTTGCTGCTGCTGGTGAAGGTTATCACAGTGATTGTGATTCTTCTTCGTCTGTGGTTGATGCTGATGACGATGAAGATTGTGTCATCATTTATTCATCCGTTCGGAAGCCGCAGCCGCGTGATATTGATCTCAATTTGCCTGCCCCGCTCAATTACAATGATGAAGAGATCACCGCACTCCGCCTCTGA 666 0.539 MARVKGAPRVDRTPVPGPNPHALPEIRYRGVRKRPWGRYAAEIRDPWKKARVWLGTFDSAIQAARAYDTAAISFRGDKAKTNFPIPEVIAVLRPLPPPPPPDNRRANAPVLARADNTVYMNYPTSSGMSSTVESFSGPRVGSSSTSRVPVFVPVNPRPVVAAAGEGYHSDCDSSSSVVDADDDEDCVIIYSSVRKPQPRDIDLNLPAPLNYNDEEITALRL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02576 221 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Vifa1g02576 221 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Vifa1g02576 221 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g02576 221 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Vifa1g02576 221 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Vifa1g02576 221 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Vifa1g02576 221 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Vifa1g02576 221 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 184 - -
Vifa1g02576 221 FunFam Ethylene-responsive transcription factor 2 27 85 - -
Vifa1g02576 221 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Vifa1g02576 221 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02576 Vifa-Chr1 403470328 403470993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02576 22 156 AP2-EREBP Transcription Factor Family AT1G50640 53.020 1.48e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g02576 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02576 K09286 - csv:101221703 163.696