Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02574 ATGAGTCGGGCTAGTGCAGCTGGTGCCAAGGGAAAGAAGAAGGGTGCAACCTTCACCATTGACTGTGCTAAGCCAGTTGAAGACAAGATCATGGACATTGCTTCCCTCGAGAAGTTTCTTCAAGAGAGGATTAAGGTCGGTGGCAAAGCCGGTGCTCTTGGTGATTCTGTTACTGTTGCCAGGGAGAAATCAAAGATCACTGTTACCTCTGACAGCAACTTCTCCAAGCGTTACTTGAAGTATTTGACAAAGAAATACTTGAAGAAACATAACGTAAGAGATTGGCTAAGGGTCATTGCTTCAAACAAAGATAGGAATATCTATGAGTTGAGGTATTTCAACATTGCAGAAAACGAAGGAGAGGAAGAGGATTAA 375 0.432 MSRASAAGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVAREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNIYELRYFNIAENEGEEED 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02574 124 Gene3D - 5 124 IPR038526 -
Vifa1g02574 124 PANTHER 60S RIBOSOMAL PROTEIN L22 1 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vifa1g02574 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vifa1g02574 124 FunFam 60S ribosomal protein L22-2 5 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02574 Vifa-Chr1 403252296 403252894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02574 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.903 2.84e-68 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02574 K02891 - csav:115723248 219.935