Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02572 ATGCGAGATGCTGATTCTGTATCGTTTACTAAAGTTCCGCTTATCTCATGTGAAAAACTAACCGGATCAGTCAATTATAACATATGGGTTCGTGCTGTCGAGATGTGGTTTCACGGTCAAGGATATGAAGAGTATCTAACCACTCAATTGAGTGACGTTGCAACCGTCAAACTCGCTAAATGGAAGAAAACTGATGCCTCTTTGTGTACTGTGTTGTGGTTTTCCATAGCACCTAACCTCCAAGCGCAGTACGAAGCATTCTCCACTTGTTATGAGGTGTGGCAAAAGGCTAAGAAAGTCTTTTCCAACGACGTTCATTCTCTATACAGTGTCATCTGCAAACTCAACACACTGAAGTTGGAAAGTATGGATGTGCAAGCTTATCTGAGTAAGCTTGATGCCTTGAAAGCAAGTTACGCAACCCTCATGCCTTACGCAAAAGATGCAATAGCTTATGTCGAACAACAGAGTAAATATATCATGGTCATGGCACTTAAAGGACTACCATCAGAACTTGAATCTGTTCGTAATCAGATTTTATCAGGAGAGCTTGACGAGATCGTGGCTGAACTTGAAGAGAGTAGAAGAAAATTAATCAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCCAGTGCAGATGCAGTGAATGGAAATGTGTCTCCCGAAAAGCCTGCTGACAGAGCCATGGGTTTGCCTGAGTTGAAGAATTTAATTGAGGAATCCAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCTCGGGAAAAAAATCAAATCTTGACGAAACAGTTTCAAGAACTTCAGAATGAACTGAATGATGATAAATATGTACGCTCTTCCCGAGTATACTCTTTGGCAAATGATCAACTTCAACATTGGATTATGGAATTGGATCGATATAAATCATTGGTGGAGTCTCTGCAGGCTGGAAGGGCTAACATCGCAAAATGGGAGAAGGAGTTGAATCTTAAATTGGACTCTTGTGATAATGCAAGGCGCATACTTGACAATTTTGACTCCAAGACTGATGACCTTGAGCTGCAGTTGGAGAAATGTATTATCGAAAAGAATCATCTTGAAATTAAGATGGAAGAAGCGAAACAGGATACTGGGAGAAAAGATATCAAATCTGAGTTTCGTGTGATGGCCTCGGCTTTATCTAAAGAAATGGGGATGATGGAAGCACAATTAAAGCGATGGAAGGATGCTGCTCTTGAAGCTGTATCATTGCGTGAGAAAGCACATTCACTAAGAGCTGAATTGAGTGGGAAGACAAGCGAACTCAAGAGCCTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATAAAGTCTTCAAAAGCATTAATTGAAAAGTTACAGCAGGAGAATCATGAGTTAGAATTTGTTCTGGATATGTATGGCGGGGAGGATTATCAGAAAAGCTTGCCAGAAGTTAGAGATTCTGAAAGTAAAGCTCGCTCTCAAGCCGAAATGCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCCTGTGAACAAAGGCTTTCTGCTGCAGAAGCCGAAAAAGAGGAGTTAAGGGCCCAGCTTGATGAAACTGAAAGAAAAAAATCGGAGCTGGCTGAGGCTATCAAAGTTAAAGAGGCTGAGGCAGAGACCTATATCTCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAGGTGGCTGAGAGGGACGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAGTTACATAGTGCTTTACTGTCTGAAAAGCAAGCTTTAGCAGATCAACTTAAACAGATTAATTCTTTGATAGAAAATTCAAAGAAAAAGATTGCAAGTAGTGTAGAACAGATAGAAAGTCTTCTATCAGAAGCCGCCAAATGTACTCAAGAGGAAAAACACATTGCAGCCGCCTTAGAGTTTGCCAGGAGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTATTGCTTTATCCTCAGAGAAAGAATACGACCAAATTCAGAAAGATGTGGAAGCTTTTGAAAAGGATTTGGATAGGGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAACAGAATTGAATAACCAAATTGCTGAGCTGAAAACTGAAAATGGGGAGGCCGCAGTACAACAACTTGAAGAAGAAATAAGAGTTTGCAAGAATATGATCAAGTGTACCGTCTGTTCTGACCGTCCAAAGGAGGTTGTAATTTTGAAGTGCTACCATCTGTTCTGTAATCCATGCATACAAAGAAATCTTGAACTCCGACACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGCGATGTTCGCTTTGTTAAAATTTGA 2427 0.4096 MRDADSVSFTKVPLISCEKLTGSVNYNIWVRAVEMWFHGQGYEEYLTTQLSDVATVKLAKWKKTDASLCTVLWFSIAPNLQAQYEAFSTCYEVWQKAKKVFSNDVHSLYSVICKLNTLKLESMDVQAYLSKLDALKASYATLMPYAKDAIAYVEQQSKYIMVMALKGLPSELESVRNQILSGELDEIVAELEESRRKLISLKMQKDAAMGMNSSSADAVNGNVSPEKPADRAMGLPELKNLIEESKIVDADRLSELQDAREKNQILTKQFQELQNELNDDKYVRSSRVYSLANDQLQHWIMELDRYKSLVESLQAGRANIAKWEKELNLKLDSCDNARRILDNFDSKTDDLELQLEKCIIEKNHLEIKMEEAKQDTGRKDIKSEFRVMASALSKEMGMMEAQLKRWKDAALEAVSLREKAHSLRAELSGKTSELKSLANKCAEQVLEIKSSKALIEKLQQENHELEFVLDMYGGEDYQKSLPEVRDSESKARSQAEMLKNALDEHGLELRVRAANEAEAACEQRLSAAEAEKEELRAQLDETERKKSELAEAIKVKEAEAETYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSALLSEKQALADQLKQINSLIENSKKKIASSVEQIESLLSEAAKCTQEEKHIAAALEFARRELADAEKELKLLKSIALSSEKEYDQIQKDVEAFEKDLDRERSSRKKLEEELTELNNQIAELKTENGEAAVQQLEEEIRVCKNMIKCTVCSDRPKEVVILKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02572 808 Coils Coil 177 204 - -
Vifa1g02572 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 737 807 IPR013083 -
Vifa1g02572 808 Coils Coil 355 375 - -
Vifa1g02572 808 PANTHER RING FINGER PROTEIN-RELATED 111 808 IPR013956 GO:0004842|GO:0010390
Vifa1g02572 808 Coils Coil 658 746 - -
Vifa1g02572 808 Coils Coil 616 650 - -
Vifa1g02572 808 Pfam Zinc finger, C3HC4 type (RING finger) 755 797 - -
Vifa1g02572 808 Coils Coil 441 468 - -
Vifa1g02572 808 Coils Coil 511 559 - -
Vifa1g02572 808 Coils Coil 256 276 - -
Vifa1g02572 808 SMART ring_2 756 794 IPR001841 -
Vifa1g02572 808 ProSitePatterns Zinc finger RING-type signature. 771 780 IPR017907 -
Vifa1g02572 808 CDD RING-HC_Bre1-like 748 804 - -
Vifa1g02572 808 SUPERFAMILY RING/U-box 755 799 - -
Vifa1g02572 808 ProSiteProfiles Zinc finger RING-type profile. 756 794 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02572 Vifa-Chr1 402420539 402444092 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02572 756 803 RAD5 or RAD16-like Gene Family AT5G05130 35.417 9.48e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02572 K10696 - gmx:100796610 933.71