Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02571 ATGGCCTCCATGCCGTCGGGGCCAAACCACCATCAACCACTGCAACGACCACCACCTCCCTTACCGTTACCGTTACAACAGCCGCAAACTGTGAATGAACCACCGAAGGCGACGGCAGTTAGTGGAGTCTCCGGTATGGAGACTGATAAGGAAATGGCAGCTACTGTCGTTGACAGTAATGATGCAGTCACTGGTCACATAATTTCAACTACTATTGGAGGCAAAAATGGTGAACCTAAACGGACAATCAGTTACATGGCCGAACGTGTTGTTGGCACGGGTTCATTTGGAATAGTTTTCCAGGCAAAGTGCTTGGAGACTGCAGAGGCAGTGGCTATAAAGAAAGTTTTGCAGGACAAGCGGTACAAAAATCGTGAGCTGCAGTTAATGCGCGTGATGGATCACCCAAATGTAATTTCTTTGAAGCACTGTTTCTTCTCTACAACAAGCAGAGACGAACTGTTTCTGAACTTGGTGATGGAATATGTGCCTGAGACGATGTACCGAGTTCTAAATCACTACAATAATATCAACCAGAGAATGCCCCTAATCTATGTGAAATTATATACATATCAGATCTTTAGAGGACTGGCATATATTCATACTGTACCGGGGGTTTGCCATAGGGATGTGAAACCCCAAAATCTATTGGTTGATCCTCTCACTCACCAAGTTAAGCTTTGCGATTTTGGAAGTGCGAAAGTTCTGGTTAAGGGTGAAGCAAACATTTCATACATATGTTCACGATACTATCGGGCCCCAGAACTAATATTTGGTGCTACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAACTTCTTCTAGGCCAGCCATTGTTCCCAGGAACAAATCAGGTGGATCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGTATGAACCCTGATTATACTGATTTTAGATTTCCTCAGATTAAAGCCCATCCTTGGCATAAGGTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTTCAATACTCACCAAGTCTTCGTTGCAGTGCGCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGAGAGCCCAACGCCCGGCTTCCTAATGGTCGTCCTCTGCCTCCACTCTTCAACTTTAAACAGGAATTTTCTGGAGCATCTCCTGAACTGATCAATAAACTCATCCCAGAACATATCAGGCGGCAAACTGGACTCGGCTTCCCATATTCCGGCTAG 1272 0.4473 MASMPSGPNHHQPLQRPPPPLPLPLQQPQTVNEPPKATAVSGVSGMETDKEMAATVVDSNDAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETAEAVAIKKVLQDKRYKNRELQLMRVMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVLNHYNNINQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGEANISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGTNQVDQLVEIIKVLGTPTREEIRCMNPDYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRPLPPLFNFKQEFSGASPELINKLIPEHIRRQTGLGFPYSG 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02571 423 FunFam Glycogen synthase kinase-3 beta 69 164 - -
Vifa1g02571 423 CDD STKc_GSK3 80 372 IPR039192 -
Vifa1g02571 423 MobiDBLite consensus disorder prediction 1 43 - -
Vifa1g02571 423 SMART serkin_6 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02571 423 ProSiteProfiles Protein kinase domain profile. 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02571 423 SUPERFAMILY Protein kinase-like (PK-like) 84 395 IPR011009 -
Vifa1g02571 423 ProSitePatterns Protein kinases ATP-binding region signature. 91 115 IPR017441 GO:0005524
Vifa1g02571 423 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 49 414 - -
Vifa1g02571 423 Gene3D Transferase(Phosphotransferase) domain 1 165 412 - -
Vifa1g02571 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vifa1g02571 423 Gene3D Phosphorylase Kinase; domain 1 70 164 - -
Vifa1g02571 423 MobiDBLite consensus disorder prediction 11 29 - -
Vifa1g02571 423 Pfam Protein kinase domain 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02571 423 FunFam Shaggy-related protein kinase kappa 165 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02571 Vifa-Chr1 402403530 402408233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02571 89 407 MAP Kinase Gene Family AT3G59790 35.329 4.82e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vifa1g02571 Pkinase 6.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02571 K14502 - mnt:21393664 737.643