Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02570 ATGGAAAATTCAGACCACGACGAACCTGGCAAGAAGAGGCCTCATCTTCTCTCCCCCGTTTCTTCCCGCATGTTCAGAAACTCATCCAACCATTCTCCTAACAGTAAAAATGCGGATGCAGAGGCCTTACAGCTCCAAAATCAGAAGCTTGTTCAACAAACAGAAATCCAGAAGCAGGCTTTACAGGATCTTGAAGAAAAAACGAGAGAATTAAAACAAAGACAAAATTCTTATGATGACTTATTAATTGCATTCAACCAACACTGGGAACAGTTGGTTGCTGATATGGCTATTCTTGGGATACAAGCTGGGAGAGACAAAGATTCTTTGCAAACTTTAGATTACCTTGATAATCCTCAAGGTTCACTTCCTCCGTGTCCTCCAAACGATCTATTTCTATGTAAATTAATCCAGAAAGATTCTATTGAAGGAAGCAGTATTGATGAGATAACTAATTTTGTTGAGAAAGCCCTTGCTTTGCGCCAGTTATCTACTAGGGAGTTGTTGGAACTCATTCATGGTACTGTTGATGATCAGATGAAAAGAATTGAAGATATAGATCGAGTTTTACATGGAGATTTATCTACGGAAGATGTTATCATCCAAATATCTAAGATTGACGATATGACGAAAAAGGAGGTTGACAATTTTTGTGAAGTAATTAAAACTCTCCACACAAAACACAGAGAATATACTGCTGACATTCAGAATTATATAGACGAGTGCTTACGAGATCAATCTGACATAAAACGCCTTAAAGGAGAGCTTGACGAGATCGTGGCTGAACTTGAAGAGAGTAGAAGAAAATTAATCAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCCAGTGCAGATGCAGTGAATGGAAATGTGTCTCCCGAAAAGCCTGCTGACAGAGCCATGGGTTTGCCTGAGTTGAAGAATTTAATTGAGGAATCCAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCTCGGGAAAAAAATCAAATCTTGACGAAACAGTTTCAAGAACTTCAGAATGAACTGAATGATGATAAATATGTACGCTCTTCCCGAGTATACTCTTTGGCAAATGATCAACTTCAACATTGGATTATGGAATTGGATCGATATAAATCATTGGTGGAGTCTCTGCAGGCTGGAAGGGCTAACATCGCAAAATGGGAGAAGGAGTTGAATCTTAAATTGGACTCTTGTGATAATGCAAGGCGCATACTTGACAATTTTGACTCCAAGACTGATGACCTTGAGCTGCAGTTGGAGAAATGTATTATCGAAAAGAATCATCTTGAAATTAAGATGGAAGAAGCGAAACAGGATACTGGGAGAAAAGATATCAAATCTGAGTTTCGTGTGATGGCCTCGGCTTTATCTAAAGAAATGGGGATGATGGAAGCACAATTAAAGCGATGGAAGGATGCTGCTCTTGAAGCTGTATCATTGCGTGAGAAAGCACATTCACTAAGAGCTGAATTGAGTGGGAAGACAAGCGAACTCAAGAGCCTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATAAAGTCTTCAAAAGCATTAATTGAAAAGTTACAGCAGGAGAATCATGAGTTAGAATTTGTTCTGGATATGTATGGCGGGGAGGATTATCAGAAAAGCTTGCCAGAAGTTAGAGATTCTGAAAGTAAAGCTCGCTCTCAAGCCGAAATGCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCCTGTGAACAAAGGCTTTCTGCTGCAGAAGCCGAAAAAGAGGAGTTAAGGGCCCAGCTTGATGAAACTGAAAGAAAAAAATCGGAGCTGGCTGAGGCTATCAAAGTTAAAGAGGCTGAGGCAGAGACCTATATCTCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAGGTGGCTGAGAGGGACGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAGTTACATAGTGCTTTACTGTCTGAAAAGCAAGCTTTAGCAGATCAACTTAAACAGATTAATTCTTTGATAGAAAATTCAAAGAAAAAGATTGCAAGTAGTGTAGAACAGATAGAAAGTCTTCTATCAGAAGCCGCCAAATGTACTCAAGAGGAAAAACACATTGCAGCCGCCTTAGAGTTTGCCAGGAGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTATTGCTTTATCCTCAGAGAAAGAATACGACCAAATTCAGAAAGATGTGGAAGCTTTTGAAAAGGATTTGGATAGGGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAACAGAATTGAATAACCAAATTGCTGAGCTGAAAACTGAAAATGGGGAGGCCGCAGTACAACAACTTGAAGAAGAAATAAGAGTTTGCAAGAATATGATCAAGTGTACCGTCTGTTCTGACCGTCCAAAGGAGGTTGTAATTTTGAAGTGCTACCATCTGTTCTGTAATCCATGCATACAAAGAAATCTTGAACTCCGACACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGCGATGTTCGCTTTGTTAAAATTTGA 2643 0.4003 MENSDHDEPGKKRPHLLSPVSSRMFRNSSNHSPNSKNADAEALQLQNQKLVQQTEIQKQALQDLEEKTRELKQRQNSYDDLLIAFNQHWEQLVADMAILGIQAGRDKDSLQTLDYLDNPQGSLPPCPPNDLFLCKLIQKDSIEGSSIDEITNFVEKALALRQLSTRELLELIHGTVDDQMKRIEDIDRVLHGDLSTEDVIIQISKIDDMTKKEVDNFCEVIKTLHTKHREYTADIQNYIDECLRDQSDIKRLKGELDEIVAELEESRRKLISLKMQKDAAMGMNSSSADAVNGNVSPEKPADRAMGLPELKNLIEESKIVDADRLSELQDAREKNQILTKQFQELQNELNDDKYVRSSRVYSLANDQLQHWIMELDRYKSLVESLQAGRANIAKWEKELNLKLDSCDNARRILDNFDSKTDDLELQLEKCIIEKNHLEIKMEEAKQDTGRKDIKSEFRVMASALSKEMGMMEAQLKRWKDAALEAVSLREKAHSLRAELSGKTSELKSLANKCAEQVLEIKSSKALIEKLQQENHELEFVLDMYGGEDYQKSLPEVRDSESKARSQAEMLKNALDEHGLELRVRAANEAEAACEQRLSAAEAEKEELRAQLDETERKKSELAEAIKVKEAEAETYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSALLSEKQALADQLKQINSLIENSKKKIASSVEQIESLLSEAAKCTQEEKHIAAALEFARRELADAEKELKLLKSIALSSEKEYDQIQKDVEAFEKDLDRERSSRKKLEEELTELNNQIAELKTENGEAAVQQLEEEIRVCKNMIKCTVCSDRPKEVVILKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02570 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Vifa1g02570 880 MobiDBLite consensus disorder prediction 21 40 - -
Vifa1g02570 880 Coils Coil 249 276 - -
Vifa1g02570 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Vifa1g02570 880 Coils Coil 427 447 - -
Vifa1g02570 880 SUPERFAMILY RING/U-box 827 871 - -
Vifa1g02570 880 Coils Coil 688 722 - -
Vifa1g02570 880 Coils Coil 730 818 - -
Vifa1g02570 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 879 IPR013083 -
Vifa1g02570 880 Coils Coil 47 81 - -
Vifa1g02570 880 PANTHER RING FINGER PROTEIN-RELATED 9 880 IPR013956 GO:0004842|GO:0010390
Vifa1g02570 880 Coils Coil 513 540 - -
Vifa1g02570 880 Coils Coil 583 631 - -
Vifa1g02570 880 Coils Coil 328 348 - -
Vifa1g02570 880 CDD RING-HC_Bre1-like 820 876 - -
Vifa1g02570 880 MobiDBLite consensus disorder prediction 284 303 - -
Vifa1g02570 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Vifa1g02570 880 SMART ring_2 828 866 IPR001841 -
Vifa1g02570 880 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02570 Vifa-Chr1 402364553 402396242 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02570 828 875 RAD5 or RAD16-like Gene Family AT5G05130 35.417 1.20e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02570 K10696 - gmx:100796610 1243.8