Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02536 ATGGCTACATTTACTAAATTATGTGTGTCACTCTCTATTATTTCTCTCTTAGCTTGTTGCTCCAATGCTCAACTTGTTGATAACTTCTATGCAACAACATGCCCTAGCCTCCAAACCACCGTACGCAATACAATGACCAGTGCTATCAAAAATGAATCAAGGATTGGTGCTTCTATACTTCGCTTGTTCTTCCATGATTGCTTTGTTAATGGGTGTGATGGATCAATCTTATTAGATGACACTGCGACATTTACTGGTGAGAAAAATGCATTGCCTAACAAAAACTCAGTTAGGGGTTTCGAAGTGATTGATACCATTAAAACCAGCGTTGAAGCTTCTTGCAATGCCACTGTTTCTTGTGCTGACATTCTAGCACTTGCAGCAAGAGATGGAGTTTTTCTGCTTGGAGGACCTTCATGGATAGTGCCACTTGGAAGAAGAGATGCAAGAACAGCAAACCAAACTGCAGCAAACAACCAAATCCCTTCACCATTCTCTGACCTACCTACCCTCACTTCAATGTTTACAGCCAAGGGTCTAACTGCAAATGACCTCACTGTCCTTTCTGGTGCACACACTATAGGCGAAGCAAAGTGTCTATTATTCAGAACTCGCATATACAATGAAACCAATATTGATCCAAACTTTGCCACCTTAAGAAAAACAACTTGTCCTTTATCTGGTGGTGACACCAATTTGGCACCTCTTGATACTCTCACTCCAACTACTTTTGACAACAATTACTATAAAGATCTTGTTGCTAAGAAAGGACTATTCGATTCTGATCAAGTTCTTTTTAATAATGGATCTCAAGATAGTTTGGTTAGCAGTTATAGTAATAATAGTGCTACTTTTTTCAATGACTTTGCTGCTGCTATGATAAAGTTGAGTGGAATCAGTCCTCTGACTGGGACTAATGGGGAGATCAGAAAGAATTGCAGGCTTGTTAATTGA 954 0.3952 MATFTKLCVSLSIISLLACCSNAQLVDNFYATTCPSLQTTVRNTMTSAIKNESRIGASILRLFFHDCFVNGCDGSILLDDTATFTGEKNALPNKNSVRGFEVIDTIKTSVEASCNATVSCADILALAARDGVFLLGGPSWIVPLGRRDARTANQTAANNQIPSPFSDLPTLTSMFTAKGLTANDLTVLSGAHTIGEAKCLLFRTRIYNETNIDPNFATLRKTTCPLSGGDTNLAPLDTLTPTTFDNNYYKDLVAKKGLFDSDQVLFNNGSQDSLVSSYSNNSATFFNDFAAAMIKLSGISPLTGTNGEIRKNCRLVN 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02536 317 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 Pfam Peroxidase 41 281 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 SUPERFAMILY Heme-dependent peroxidases 24 317 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 Gene3D Peroxidase, domain 2 162 296 - -
Vifa1g02536 317 FunFam Peroxidase 162 296 - -
Vifa1g02536 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Vifa1g02536 317 CDD secretory_peroxidase 24 316 IPR033905 GO:0004601|GO:0042744
Vifa1g02536 317 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Vifa1g02536 317 FunFam Peroxidase 28 165 - -
Vifa1g02536 317 Gene3D - 28 314 - -
Vifa1g02536 317 ProSiteProfiles Plant heme peroxidase family profile. 24 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 PANTHER PEROXIDASE 72-RELATED 19 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02536 317 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02536 Vifa-Chr1 400152763 400153866 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02536 23 317 Peroxidase AT5G05340 62.963 3.51e-138 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02536 K00430 - gmx:100803503 471.085