Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02533 ATGGCTACATTTACTAAATTATGTGTGAGTGTGACACTCTCTATTATTTTTCTCTTAGCTTGTTGCACCAATGCACAACTTGTTAATAACTTCTATGGAACAACATGCCCTAGCCTCCAAACCACCGTACGCAATACAATGACCAGTGCTATCAAAAATGAATCAAGGATTGGTGCTTCAATACTTCGCTTGTTCTTCCATGATTGCTTTGTTAATGGGTGTGATGGATCAATCTTATTAGATGACACTGCGACATTTACTGGTGAGAAAAATGCATTACCTAACAAAAACTCAGTTAGGGGTTTCGAAGTGATTGATGCCATTAAAACCAGCGTTGAAGCTTCTTGCAATGCCACTGTTTCTTGTGCTGATATTCTAGCACTTGCAGCAAGAGATGGAGTTTTTCTGCTTGGAGGACCTTCATGGATAGTGCCACTTGGAAGAAGAGATGCAAGAACAGCAAACCAAACTGCAGCAAACAACCAAATCCCTTCACCATTCTCTGACCTACCTACCCTCACTTCAATGTTTGCAGCCAAGGGTCTAACTGCAAATGACCTCACTGTCCTTTCTGGTGCACACACTATAGGCCAAGCAAAGTGTCTATTATTCAGAACTCGCATATACAATGAAACCAATATTGATCCAAACTTTGCCACCTTAAGAAAAACAACTTGTCCTTTATCTGGTGGTGACACTAATTTGGCACCTCTTGATACTCTCACTCCAACTACTTTTGACAACAATTACTATAAAGATCTTGTTGCTAAGAAAGGACTATTCCATTCTGATCAAGTTCTTTTCAATAATGGATCTCAAGATAGTTTGGTTAGCAGTTATAGTAATAATAGTGCTACTTTTTTCAATGACTTTGCTGCTGCTATGATAAAGTTGAGTAGAATCAGTCCTCTCACTGGGACTAATGGTGAGATCAGAAAGAATTGCAGGCTTGTTAATTGA 960 0.3917 MATFTKLCVSVTLSIIFLLACCTNAQLVNNFYGTTCPSLQTTVRNTMTSAIKNESRIGASILRLFFHDCFVNGCDGSILLDDTATFTGEKNALPNKNSVRGFEVIDAIKTSVEASCNATVSCADILALAARDGVFLLGGPSWIVPLGRRDARTANQTAANNQIPSPFSDLPTLTSMFAAKGLTANDLTVLSGAHTIGQAKCLLFRTRIYNETNIDPNFATLRKTTCPLSGGDTNLAPLDTLTPTTFDNNYYKDLVAKKGLFHSDQVLFNNGSQDSLVSSYSNNSATFFNDFAAAMIKLSRISPLTGTNGEIRKNCRLVN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02533 319 FunFam Peroxidase 30 167 - -
Vifa1g02533 319 FunFam Peroxidase 164 298 - -
Vifa1g02533 319 Gene3D - 30 316 - -
Vifa1g02533 319 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 Pfam Peroxidase 43 283 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Vifa1g02533 319 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vifa1g02533 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Vifa1g02533 319 ProSiteProfiles Plant heme peroxidase family profile. 26 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 PANTHER PEROXIDASE 72-RELATED 19 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g02533 319 CDD secretory_peroxidase 26 318 IPR033905 GO:0004601|GO:0042744
Vifa1g02533 319 Gene3D Peroxidase, domain 2 164 298 - -
Vifa1g02533 319 SUPERFAMILY Heme-dependent peroxidases 26 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02533 Vifa-Chr1 400022722 400023847 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02533 25 319 Peroxidase AT5G05340 63.636 1.49e-139 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02533 K00430 - gmx:100803503 471.085