Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02530 ATGGTGGAAGATGAAGATTATAGAAGGAAAGCCAAGATTGCACTTGTAGCTGTTGTGCTACTTGCTTCCTCGCTGTTTTTGCTTCTTTTGTTGCTTTTGCTTACTATTGTTACATCCGTAACGAGGTTGCCAAGCGCAGACGCAATGGCCATAAAGTTGAAGATGCTGCTAACCTTAATGAGAAAATTTACCGTGGAAGTGCTCAATGATGGAAGGAAGGTTGGGATTAAGTTTATGGATCAAGCAGGGAAGCAAGGAGAAGAAGAGTTTAAAGTCGAGGTGGAATTGCTAAGTCGGTTGCATTCGCCATATTTGCTTGCATTGCTTGGGTACTGCTCTGATCATAATCATAAGCTGTTGGTGTATGAATTTATGGCGAATGGTGGCTTGCAAGAACATCTTTATCCTGTCAGCAATAACAATTCGAGTGTCACGTCTGTTAATTTAGATTGGGAAACTCGATTAAGAATAGCACTTGAAGCTGCCAAGGGTTTGGAATATCTTCATGAACATCTTGGACCTGATAGAGTCGGTGGACATGTTTCAACTCGCGTTTTAGGCACCCAAGGATATGTTGCCCCTGAATATGCACTAACAGGACATTTAACAACAAAATCAGATGTGTATAGTTATGGTGTCGTACTTTTGGAGCTTCTTACCGGCCGAGTGCCTGTTGATATGAAGAGACCTCCTGGAGAAGGCGTACTCGTTACTTGGGCTTTGCCCCTTTTGACTGATAGAGAAAAAGTTGTAAAGATTATGGATCCAGCATTGGAGGGACAGTACTCAATGAAAGATGTTATCCAAGTAGCAGCGATTGCGACAATGTGTGTGCAACCAGAAGCAGATTACAGACCTCTCATGGCAGATGTAGTGCAGTCTTTGGTTCCATTGGTGAAGACGCACCGATCCAACTCAAAAGTAGGCAGCTGCTCTAGTTTCAATTCACCCAAGTTGTCACCTGGCCCTGCCCAATATTCAGTTAATGCAAATATGTAA 999 0.4294 MVEDEDYRRKAKIALVAVVLLASSLFLLLLLLLLTIVTSVTRLPSADAMAIKLKMLLTLMRKFTVEVLNDGRKVGIKFMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDHNHKLLVYEFMANGGLQEHLYPVSNNNSSVTSVNLDWETRLRIALEAAKGLEYLHEHLGPDRVGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVTWALPLLTDREKVVKIMDPALEGQYSMKDVIQVAAIATMCVQPEADYRPLMADVVQSLVPLVKTHRSNSKVGSCSSFNSPKLSPGPAQYSVNANM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02530 332 Gene3D Phosphorylase Kinase; domain 1 64 125 - -
Vifa1g02530 332 ProSiteProfiles Protein kinase domain profile. 37 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02530 332 Gene3D Transferase(Phosphotransferase) domain 1 126 173 - -
Vifa1g02530 332 Gene3D Transferase(Phosphotransferase) domain 1 174 314 - -
Vifa1g02530 332 PANTHER OS07G0668900 PROTEIN 172 305 - -
Vifa1g02530 332 Pfam Protein tyrosine and serine/threonine kinase 70 171 IPR001245 GO:0004672|GO:0006468
Vifa1g02530 332 SUPERFAMILY Protein kinase-like (PK-like) 68 295 IPR011009 -
Vifa1g02530 332 Pfam Protein kinase domain 182 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02530 Vifa-Chr1 399790029 399792066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02530 1 331 Receptor kinase-like Gene Family AT3G58690 57.214 2.55e-142 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa1g02530 Pkinase 1.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02530 - - psat:127086543 494.197