Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02526 ATGCAAGCAATGGGGTTATCAGTAGCAGTTTCAGTTCCATTTTACCATTCCAGATTATGCATCAATGCCTCTCCTCATCCACCCATTCCCCTCAATTTGAATCATGGATTTTCCAAATCACTTACATTCAGGGATAGACTAACTCGTGGGAAGAGTAGCTATGTCATTCGTTCCCAAAAGGATCGTGACGATGATGGTGATGTCGATGGATTTTACATGAGGAAAAGCGTTGATCTCGCCAGAAAGGCTTTGGGGTGTACAAGCCCCAATCCTTTAGTTGGATGTGTTATTGTCAAAGATGGTCAAATTGTTGGCCAAGGTTTTCATCCTAAACCTGGTCAACCTCATGCTGAGGTGTTTGCTCTGAGAGATGCTGCTGATTTGGACGAGAATGCAACGGCGTATGTCACTTTAGAACCTTGTAATCATTTTGGGAGGACTCCGCCTTGCACTGAAGCTCTCATTAAAGCTAGACTTAAAAAGGTTGTTGTTGGGATGGTGGATCCAAATCCTATCGTGGCTTCCAAAGGGTTAGATAGATTGAGAGGTGCTGGAATTGAAGTTGTTGTTGGTGTTGAGGAAGAATTGTGTAAAGGCCTCAATGAGGGTTATATTCATCACATGTTGACCCAGAAGCCTCTGCTTACTTTGAGGTATTCTCTTTCTGTCAACGGAAACTTGTTGGACTCACTTGGGAATGGAGTAACTCACTCTGGTGGATACTATTCTAGGCTATTACAAGAATATGATGCAGTTATATTATCCTCTTCTTTATTCTGTGAAACTTTATCGGTCGACTCTGTACCTTCATCTCAAGAACCTGGAGCCAATCAACCCATTCGGTTTATAATGCATAGAGATTCTGGTTCTGGTTCTTCAAATCAAATTCCATTTATAATCGATAATGTTACTGATAAAATGATAATCTTTACAGATTGTATAACAACAGCTCCCGAGGAGACTCAACAAGGAATTAAAACTGTATCTGTGGATCAAATAAATCTTGATGTGATCTTGGATTATTGTAATCGTCAAGGATTATGCAGTGTTCTGTTAGATATGAGAGGGAATTTCAGTGAATATCAAGAGCTTGTTAAAGAGGGTGACGATGAAGCCATCTCCGAACTCGACCACGAAATCCGCACCAGGATTCTCCGTGAGAAGTCTAACGCTGACAACACCCTTGCTGCCGCTGAACAAAAGGTCTCTGAATTGGAGGCTCAATTGGAGGGATTGAGGTCTGCTCCTTCTCAGAAGGATTTACTCGACAAAGAGAAGGAAATGCTTCAAGGTGATGTCATTAAGTTTCAAAAGATTATTGACGAGTTTGGGTTGCGGATTGAGTCGAAAGAGAGGGATTTGGTGGAATTAGGAACACTTCTCTATGGTTTGAAATATGATGAAAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCGGAATCGATAGATAATGTGGGACTGCATGATTTATTTCAAGAATATGGGAATATTTTGTCTAGCAAAATTGTCATCTCTGAAGATGGGAAGAGCAAAGGGTTTGGTTATATACAGTTTGGTTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTTGCCTGAACCTGATGCCAAATATACAAACTTGTACGTTAAGAATTTGGACCCAGATATTACCGAAGCACTTCTTAAAGAAAAGTTCTCATCTTTTGGAAAAATTCTTAGCTTGGCTATTGTAAAGGATGAGAAGGGGTTGTCAAAAGGTTTTGGATTTATGAACTATGAAAACCCGGATGATGCAAGACGAGCAACGGAAGCAATGAATGGATCACAATTTGGTTCAAAGAACCTGTATGTTGCAAGAGCACAAAAAAAGGTTGAACGTGAGAAGATCTTGCATCAGTGGTTTGCAGAAAGATGCATGGAGAAAAACTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTGATGATAGTGTTAGTGACGAAGAACTAAAGAGTCAGTTTAGTGCTTGTGGCACAATAACTTCTGCAAAAGTTATGCGAGATGACAAAGGAAAAAGCAAAGGCTTTGGGTTTGTCTGTTTCTCTACCCTGGATGAGGCTGTTAAGGCTGTGAACAGTTTTCATGGACGCATGTTTCACGGAAAACCACTGTATGTTGCTTTTGCTCAGAGGAAAGATGTTAGGCAAAGCCTATTGCAGCTCCAGCATTCGCACTGGTGTTGTTTATCATCACCCTAA 2370 0.4076 MQAMGLSVAVSVPFYHSRLCINASPHPPIPLNLNHGFSKSLTFRDRLTRGKSSYVIRSQKDRDDDGDVDGFYMRKSVDLARKALGCTSPNPLVGCVIVKDGQIVGQGFHPKPGQPHAEVFALRDAADLDENATAYVTLEPCNHFGRTPPCTEALIKARLKKVVVGMVDPNPIVASKGLDRLRGAGIEVVVGVEEELCKGLNEGYIHHMLTQKPLLTLRYSLSVNGNLLDSLGNGVTHSGGYYSRLLQEYDAVILSSSLFCETLSVDSVPSSQEPGANQPIRFIMHRDSGSGSSNQIPFIIDNVTDKMIIFTDCITTAPEETQQGIKTVSVDQINLDVILDYCNRQGLCSVLLDMRGNFSEYQELVKEGDDEAISELDHEIRTRILREKSNADNTLAAAEQKVSELEAQLEGLRSAPSQKDLLDKEKEMLQGDVIKFQKIIDEFGLRIESKERDLVELGTLLYGLKYDERPENKLGDDETWDRAESALKEALDECGKGNVFVKNLAESIDNVGLHDLFQEYGNILSSKIVISEDGKSKGFGYIQFGSEESANDAIQKMNGSTVRDKQIYVGKFIRKSERSLPEPDAKYTNLYVKNLDPDITEALLKEKFSSFGKILSLAIVKDEKGLSKGFGFMNYENPDDARRATEAMNGSQFGSKNLYVARAQKKVEREKILHQWFAERCMEKNLKYKGSNIYVKNIDDSVSDEELKSQFSACGTITSAKVMRDDKGKSKGFGFVCFSTLDEAVKAVNSFHGRMFHGKPLYVAFAQRKDVRQSLLQLQHSHWCCLSSP 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02526 789 Gene3D - 578 680 IPR012677 -
Vifa1g02526 789 SMART rrm1_1 589 661 IPR000504 GO:0003723
Vifa1g02526 789 SMART rrm1_1 498 570 IPR000504 GO:0003723
Vifa1g02526 789 SMART rrm1_1 692 764 IPR000504 GO:0003723
Vifa1g02526 789 FunFam Polyadenylate-binding protein 579 673 - -
Vifa1g02526 789 CDD RRM4_I_PABPs 690 768 - -
Vifa1g02526 789 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 73 359 IPR004794 GO:0008835|GO:0009231
Vifa1g02526 789 FunFam Polyadenylate-binding protein 498 578 - -
Vifa1g02526 789 CDD Riboflavin_deaminase-reductase 73 185 - -
Vifa1g02526 789 Coils Coil 381 415 - -
Vifa1g02526 789 Gene3D Dihydrofolate Reductase, subunit A 208 359 IPR024072 -
Vifa1g02526 789 SUPERFAMILY RNA-binding domain, RBD 587 772 IPR035979 GO:0003676
Vifa1g02526 789 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 693 761 IPR000504 GO:0003723
Vifa1g02526 789 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 590 658 IPR000504 GO:0003723
Vifa1g02526 789 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 499 567 IPR000504 GO:0003723
Vifa1g02526 789 PANTHER RNA BINDING PROTEIN 449 774 - -
Vifa1g02526 789 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 116 154 IPR016192 GO:0008270|GO:0016787
Vifa1g02526 789 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 588 665 IPR000504 GO:0003723
Vifa1g02526 789 SMART rrm2_1 692 764 IPR003954 GO:0003676
Vifa1g02526 789 SMART rrm2_1 498 570 IPR003954 GO:0003676
Vifa1g02526 789 SMART rrm2_1 589 661 IPR003954 GO:0003676
Vifa1g02526 789 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 67 189 IPR002125 -
Vifa1g02526 789 SUPERFAMILY RNA-binding domain, RBD 496 578 IPR035979 GO:0003676
Vifa1g02526 789 Gene3D - 681 776 IPR012677 -
Vifa1g02526 789 SUPERFAMILY Cytidine deaminase-like 69 208 IPR016193 GO:0003824
Vifa1g02526 789 FunFam Riboflavin biosynthesis protein RibD 67 206 - -
Vifa1g02526 789 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 691 768 IPR000504 GO:0003723
Vifa1g02526 789 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 497 574 IPR000504 GO:0003723
Vifa1g02526 789 Gene3D - 463 577 IPR012677 -
Vifa1g02526 789 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 71 166 IPR002125 -
Vifa1g02526 789 CDD RRM3_I_PABPs 587 666 - -
Vifa1g02526 789 Gene3D Cytidine Deaminase, domain 2 58 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02526 Vifa-Chr1 399300534 399304540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02526 495 779 Eukaryotic Initiation Factors Gene Family AT2G36660 59.649 2.16e-116 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02526 - - gmx:100786393 465.692