Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02524 ATGGAATTGCAATCAAACCTACTAGCATTATTATCTTCACTTCACATTTTCTGTCTCATTTTGATCAAGACAAATGCAAAGGTTCCGGCAATTATCGTGTTCGGCGACTCCTCCGTTGACGCCGGGAACAACAACTTTATTCCCACGGTTGCACGGAGCAATTTTCAACCGTATGGACGTGACTTCCTGGGCGGAAAAGCGACCGGAAGATTCTCGAATGGGAGAATACCGACCGATTTCATATCAGAAGCTTTTGGTATAAAAGAATATGTGCCTGCTTACTTGGATCCTAAGAATAATATTTCAGATTTTGCAACTGGTGTCAGTTTTGCCTCTGCTGCTACTGGTTATGATAATGCAACTTCAGCTGTACTTGGTGTGATACCATTATGGAAGCAATTAGAGTACTACAAACAATACCAAAAGAATCTAACTGCATATCTTGGAGAAACCAAAGCAAAGGAGAGCATTTCTGAATCATTACACCTTATGAGTATTGGAACAAATGATTTCCTAGAGAATTACTATACCATGCCTGGTAGGGCATCACAATACACAATTCAACAGTACCAAACTTTTCTCGCTGGAATTGCCGAAAATTTCATAAGGAGTCTATATGGTCTTGGTGCTAGGAAGATTTCCCTTGGAGGGGTACCTCCCATGGGATGCTTGCCATTGGAGAGAACTACAAATTTTATGGAGCAGAATGGTTGTGTTGCAAGCTACAATAACGTAGCACTTGAATTCAATGGTAAACTCCAGAATATAACTACTAAGCTCAACCAAGAGCTCCCTGGATTGAAGCTGTTCTTTTCAAATCCATATCACATTATGTTGCATATCATAAAGAAACCTGAACTCTATGGGTTTGAATCAGCCTCAGTGGCATGTTGTGCTACTGGAATGTTCGAGATGGGTTATGCATGCAGCAGGGGCAGCATGTTCAGTTGTTCTGATGCTTCCAAATTTGTGTTTTGGGACTCTTTTCATCCCACGGAGAAAACGAATAGTATCGTTGCAAAGTATGTGGTGGAGCATGTTTTAGCTCAGCTTTTAGAATAA 1062 0.4087 MELQSNLLALLSSLHIFCLILIKTNAKVPAIIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFLGGKATGRFSNGRIPTDFISEAFGIKEYVPAYLDPKNNISDFATGVSFASAATGYDNATSAVLGVIPLWKQLEYYKQYQKNLTAYLGETKAKESISESLHLMSIGTNDFLENYYTMPGRASQYTIQQYQTFLAGIAENFIRSLYGLGARKISLGGVPPMGCLPLERTTNFMEQNGCVASYNNVALEFNGKLQNITTKLNQELPGLKLFFSNPYHIMLHIIKKPELYGFESASVACCATGMFEMGYACSRGSMFSCSDASKFVFWDSFHPTEKTNSIVAKYVVEHVLAQLLE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02524 353 SUPERFAMILY SGNH hydrolase 24 346 - -
Vifa1g02524 353 FunFam GDSL esterase/lipase APG 21 348 - -
Vifa1g02524 353 CDD SGNH_plant_lipase_like 29 343 IPR035669 -
Vifa1g02524 353 Pfam GDSL-like Lipase/Acylhydrolase 31 343 IPR001087 GO:0016788
Vifa1g02524 353 PANTHER GDSL ESTERASE/LIPASE EXL3 19 343 - -
Vifa1g02524 353 Gene3D SGNH hydrolase 19 350 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02524 Vifa-Chr1 399127236 399128863 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02524 14 347 Pollen Coat Proteome AT1G75910 36.207 1.38e-66 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02524 - - gmx:100804416 583.563