Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02523 ATGGTAACCCTTTCGCTTCTGCATAATTCAAACCTCGTTCTTCTCTTCAACCCTTCACACCAAAACCCTATTCTCTCCCACCAAAACCCCATCTCTTCAATCTCTCTCAAAACTTCACCACCCCGCTGTTCAAATTCCGCCATTGTTCCCGCTCCTTCTCCGCCACCTCCAGTTCGCATCAGAGGCCGCCCTAAAATCGAAGCACGGCTTGCTCTACGTGATTACCTTCAGTACACTCAATGTTACACTTTCATAGACGCGGATTTTATCTCTAAAAACTCTCCGCATTTCGTCAATTGGCTTATATGCAGAGTCAGAGACAACAACAGAGACGATGATTTTGATTTTCCTCGGGCTCTCAGAAGGTATCTTATGTATCACCCTATTAATGAATTTGAACCTTTTCTAGAGAGTATAGGGATTAAACAAAGGGAATTGAAGTTACTTTTGCCTAAAGACTTGTTTTTTCTTCGTGATGATAGTGTTTTGGTTGAGAATTTTCATGTTTTGTTTAATCACGGGGTTCCGAGGAATAGGATGGGGAAGATTTATAGAGAAGCAAGAGAGGTTTTTGGATATGGGAGTGGTGTTTTGTCGAAGAAATTTGAGAGTTATGAGAATTTGGGGTTGAGTAAATCATCACTTGTGAAGCTGTTTGTTTGTTGTCCATTGCTTTTGGTTGGTGATGAGGTTGATTCTCGGTTTGTTGTTGTTCTTGATTGGTTGAAGAAAATTGGGATTGACAGTGGATGGTTTGTGACTTGTATGTGTTCTACGAGAAGATATAGATTCAATTGGAAAGCGATTAGTGATAGTATAGAGTTTTTTCATCAAGGGGGATATTCGGAGAAAGAATTGTATGATTTGTTTAAGGCGGATCCGAAATTGTTGTTGGAGGGTTTAGGAAAGAAGGCATATTTGGTTGTAGGTGGGTTGATTAAGTTGGGTTTTGACGTGAATGAGATTTGTTGTTTTTTTAGAGAGCATCCTGATATATTGTCAAGTCTGCGTATGGAAAATTTGATATTGGTGATTGCTTTTTTGCATAATATTCGAATGGAACAAGATGCTATTGCTGATGTTTTGTATAACTACATGCACGACCTTAGCAAACATTCAATAAAAAGTTATAGAACTGTCCGTAAAGAGTTGGGAGTTGGAGAAGCTAATTTATGTGAAATGATAAAGGATGATCCGTTAGAGTTTTTTAGTTTGGTTTTAACACCGAAGCAGAAGAAGGATATAAATGACTTCTACATTGACCCACTTAGGTATTTGGAGAAAACAAGTTTCTTGCGGAAACTTGGGTATACCGATAACTCTGAGGAGATGGAAATAGCTATGAAGATGTTTGATGGGAGAGGTGATAAGTTACTAGAGAGATTTGATTGCTTGGTTGAAGCTGGTTTGGAATATAATGCTGTAGTTGGAATGGTAAGGCGAGTTCCTAAGATTCTAAGCCCTAGGAAAACTGTATTGCAAAAGAAGATTGATTTCTTAAGGAACACTTTAGGTTACCCTATAGAATCTCTTGTGGGATTTCCAACGTATCTTATCCATAGTTTGGACAAAATTTTCATAAGATTTGCAATGTATGAGTGGTTGAAGAAGAGGAATGTAATAGATCGCGAGTTATGCTTGAGTACCATAGTTTCAGCTTCTGAGGTATGTTTTCTAAAACTCTATGTGAATGCACATCCTGAAGGTCCAACGGCTTGGCAAACTATAAAAAGTTTATCTAACAAATATTACGATTAA 1758 0.3811 MVTLSLLHNSNLVLLFNPSHQNPILSHQNPISSISLKTSPPRCSNSAIVPAPSPPPPVRIRGRPKIEARLALRDYLQYTQCYTFIDADFISKNSPHFVNWLICRVRDNNRDDDFDFPRALRRYLMYHPINEFEPFLESIGIKQRELKLLLPKDLFFLRDDSVLVENFHVLFNHGVPRNRMGKIYREAREVFGYGSGVLSKKFESYENLGLSKSSLVKLFVCCPLLLVGDEVDSRFVVVLDWLKKIGIDSGWFVTCMCSTRRYRFNWKAISDSIEFFHQGGYSEKELYDLFKADPKLLLEGLGKKAYLVVGGLIKLGFDVNEICCFFREHPDILSSLRMENLILVIAFLHNIRMEQDAIADVLYNYMHDLSKHSIKSYRTVRKELGVGEANLCEMIKDDPLEFFSLVLTPKQKKDINDFYIDPLRYLEKTSFLRKLGYTDNSEEMEIAMKMFDGRGDKLLERFDCLVEAGLEYNAVVGMVRRVPKILSPRKTVLQKKIDFLRNTLGYPIESLVGFPTYLIHSLDKIFIRFAMYEWLKKRNVIDRELCLSTIVSASEVCFLKLYVNAHPEGPTAWQTIKSLSNKYYD 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02523 585 SMART mt_12 287 318 IPR003690 GO:0003690|GO:0006355
Vifa1g02523 585 SMART mt_12 216 248 IPR003690 GO:0003690|GO:0006355
Vifa1g02523 585 SMART mt_12 323 354 IPR003690 GO:0003690|GO:0006355
Vifa1g02523 585 SMART mt_12 508 541 IPR003690 GO:0003690|GO:0006355
Vifa1g02523 585 SMART mt_12 181 211 IPR003690 GO:0003690|GO:0006355
Vifa1g02523 585 SMART mt_12 476 507 IPR003690 GO:0003690|GO:0006355
Vifa1g02523 585 Gene3D Transcription termination factor 3, mitochondrial 305 574 IPR038538 -
Vifa1g02523 585 Gene3D Transcription termination factor 3, mitochondrial 128 304 IPR038538 -
Vifa1g02523 585 PANTHER CGI-12 PROTEIN-RELATED 270 565 IPR003690 GO:0003690|GO:0006355
Vifa1g02523 585 Pfam mTERF 450 558 IPR003690 GO:0003690|GO:0006355
Vifa1g02523 585 Pfam mTERF 273 417 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02523 Vifa-Chr1 399117332 399119089 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g02523 mTERF 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02523 - - psat:127118043 874.774