Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02519 ATGAGGAAAAGAGAGAGGGAAAACCCTTGTGGGGTATGTGGGCACTATCACAAATATGAAGAAGGTGAAGTGTGTTCGATTTGTGGGCATAGGGTTCCTGTTGGATCGGAGAAAAGTTCGATTCAAGTTAGTGCTTTTCCTTCTGTGATCTTGCCGGAGTTTCTTTACTTGGGGAGCTATGATAATGCTTCACGCTCCGAGCTTCTGAAAACTCAGGGGATTTCACGGATTCTCAATACAGTCCCTTCTTGCCAGAATCTCTACAAGAACTCATTTACATATCACTGCCTCCCAGATGATAAAAGTTTCCAATTTGATGAAGCAAACCAGTTTCTAGAGCAATGTGAGAAGGACAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAGGTCCGCAGCTGTTGTGATTGGCTACCTGATGAAGTCGAGAGGATGGAGACTTGCTCCGAGTTATCAGTGGGTAAAGGAACGCAGACCGGCCGTTGAATTAACTGAAGCCGCCTACCAGCATCTACAGGAATACGAGAAAACTCTTTTCGGATCAGTCGGAAACTCTTTTTTTCTGCCTTCTGCTTTCTCACCTACAGCAGGTCCATCTTTTGGCTTCCCGAAACCCAACGATCAACCTCCACTTCCCGCCTTTCCCGCCTTTCCCGCCTTCAGCTGCGCTGGTACTCCTTCAATTTTCACCCGACCACCCCTCGATATAGCTCCTACCGAGTTCACATTTGGAGCCGGTCAGAATGTTACTGGAAATCCTTTCAATACAAATCCACCTAATCCGAATATCACCGATATTCAAATGGATGGATCTTGA 822 0.4635 MRKRERENPCGVCGHYHKYEEGEVCSICGHRVPVGSEKSSIQVSAFPSVILPEFLYLGSYDNASRSELLKTQGISRILNTVPSCQNLYKNSFTYHCLPDDKSFQFDEANQFLEQCEKDKERVLVHCMSGKSRSAAVVIGYLMKSRGWRLAPSYQWVKERRPAVELTEAAYQHLQEYEKTLFGSVGNSFFLPSAFSPTAGPSFGFPKPNDQPPLPAFPAFPAFSCAGTPSIFTRPPLDIAPTEFTFGAGQNVTGNPFNTNPPNPNITDIQMDGS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02519 273 SMART dsp_5 46 179 IPR020422 GO:0006470|GO:0008138
Vifa1g02519 273 Pfam Dual specificity phosphatase, catalytic domain 55 178 IPR000340 GO:0008138|GO:0016311
Vifa1g02519 273 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 273 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Vifa1g02519 273 FunFam Protein-tyrosine-phosphatase IBR5 36 186 - -
Vifa1g02519 273 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 105 171 IPR000387 GO:0016311|GO:0016791
Vifa1g02519 273 CDD DSP_plant_IBR5-like 47 176 - -
Vifa1g02519 273 MobiDBLite consensus disorder prediction 252 273 - -
Vifa1g02519 273 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311|GO:0016791
Vifa1g02519 273 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 181 IPR029021 -
Vifa1g02519 273 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470|GO:0008138
Vifa1g02519 273 Gene3D Protein tyrosine phosphatase superfamily 40 186 IPR029021 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02519 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 73.964 2.71e-94 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02519 K04459 - gmx:100808721 426.787