Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02515 ATGGCAGAGAGAATTCACATATCTAATGAAGACATCAAGAATGAAGGTAGTAATGATATCGGAAGAAAACCCTCTTGTCCAAATCGAAGAAAACGTTCCTTCTTTGACTTAAACAAAGAAGTGGTAGATGATGGACATGATGATCATGTGATACTACTTGTAAGTGACGAAGGCCTTAATAGTGGCGAGATAAGCAACAACATTGAGATATCATCACAAGAGGAGAAATTGAGTAGCAATGATCAAAATTCAAGTGATCAAGAAGGGAAAGGGCGTGGAATTAGGGTAAGACAATATGTTAGGTCGAAAATGCCTAGGCTTCGTTGGACTCCTGATCTTCATTTATCTTTTGTGCATGCTGTTGAGAGGCTTGGAGGCCAAGAAAGAGCAACGCCCAAGCTGGTTCTCCAATTGATGAATGTGAGAGGACTTAGCATTGCACATGTTAAGAGTCATTTGCAGATGTATAGGAGTAAAAAACTTGATGAGTCTGGCCAAGTTTTATCCCATAAAAATAAGGAAATGCAAGGAAGGCATCATCGCATTTTGGATATGTATGGAAGATTTAATGTTCAAGGGCACTTTGGTGTTAATAATAACAATTATTATCAGCCATATAGTGAAATCAAAGCTCATAGCACTTCAAGGTTTCATCAGAGTGGACTTTTCAACAATCATGTGATGTTAAGATCAAGTTCAATGTGGGACATAGATTTATATAAGACAAGTTCACATATATTTGATGTAAAAGATGCAATAACAAAAAATAATAATGGACCTATAAATTCTACTCAAATAAATCAGTTACTACCTGAAGAAAAGAAGTGGCCTCTTCGATTACAAGGAAATGAAAATCATGAATTTAAAAGCTTGTGTCGAGATGATCATAGTGCACAGCATTTTTCATGGAGTTCTGTCTTCAACAAGGTACATGATAAAAAAGATCAAATGCAAGAATTGAAACACCAAACTCAAACTCAAGTATCAAAGAAAGAATATTCACCAAGTTTCTTAGAACTAAAGCTAAGTCAAGACTCAGAAATTAGCGTTAAGAATCAGATAAATATGAATCCAGCGGGCGAAGAAGAAACACATATAGTTCTCTCTCTTTAG 1113 0.3576 MAERIHISNEDIKNEGSNDIGRKPSCPNRRKRSFFDLNKEVVDDGHDDHVILLVSDEGLNSGEISNNIEISSQEEKLSSNDQNSSDQEGKGRGIRVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSHKNKEMQGRHHRILDMYGRFNVQGHFGVNNNNYYQPYSEIKAHSTSRFHQSGLFNNHVMLRSSSMWDIDLYKTSSHIFDVKDAITKNNNGPINSTQINQLLPEEKKWPLRLQGNENHEFKSLCRDDHSAQHFSWSSVFNKVHDKKDQMQELKHQTQTQVSKKEYSPSFLELKLSQDSEISVKNQINMNPAGEEETHIVLSL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02515 370 Gene3D - 104 161 - -
Vifa1g02515 370 MobiDBLite consensus disorder prediction 72 96 - -
Vifa1g02515 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 84 283 IPR046955 GO:0003700
Vifa1g02515 370 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g02515 370 FunFam Myb family transcription factor 103 161 - -
Vifa1g02515 370 SUPERFAMILY Homeodomain-like 103 159 IPR009057 -
Vifa1g02515 370 MobiDBLite consensus disorder prediction 72 87 - -
Vifa1g02515 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 105 160 IPR006447 GO:0003677
Vifa1g02515 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 161 IPR017930 -
Vifa1g02515 370 Pfam Myb-like DNA-binding domain 107 157 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02515 Vifa-Chr1 398562730 398564781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02515 96 185 G2-like Transcription Factor Family AT2G42660 67.778 1.89e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g02515 Myb_DNA-binding 9.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02515 - - mtr:25487436 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02515 1 398562730 398564781 Vifa1g02515 1 398562730 398564781 ECH