Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02484 ATGGCTTTAACTTTAACTTCGACGCACCTTCGTTTTCAACCTTTACTCTCGCGCACCAACTACGTCTTCTTCTCCGACCTTACCGAATTCCGTTCTCTCGAAACACAGAGTCGTGATTCTCTCACTCCTCTTCTCCGGAGAAAGATCTCCGTTACGTCACTGTCGGCTCTGAAGCCGGTGAAATGCAGTAGATCCACGGAGGAGAAGCAGTGGAACGAGACGGAATCCGTCGCGTCTGACGCCGATGAAGCTGTAGATGAGTCAAATGGTCCGAATCCGATCCGAACTTCTTCTATTGAGCCTCAGAGGATTGCAGGCGATTCTCCTTCTCTCGGAATTCGAGAACCTGTTTATGAAGTTGTAGAAGTGAAATCAGACGGGGCAGTATCGACTAGAAAAATCAACAGGAGACAATTATTGAAGTCGAGTGGTCTTCGTCCCCGGGATGTCCGGAGTGTGGATCCATCATTGTTTTTGACGAATTCAATGCCTTCTTTGCTGGTTCGTGAGTATGCTATACTTCTAAACCTGGGTTCGCTACGAGCAATAGCAATGCAAGATTGTGTGCTTATATTTGACTATAATCGTAAAGGTGGGCAAGCTTTTCTAGACACTTTGCTGCCTAGGTTGAACCCCAAGAATAACAATGGAGGGCCATCAATGCCATTTGAAATTGAGGTTGTCGAAGCAGCATTGCTTTCAAGAATACAACGTTTGGAGCGGAGACTGATGGACTTAGAACCCCGTGTTCAAGCTCTTCTTGAGGCGTTGCCAAATCGGATAACTGGTGACATATTGGAGCAACTACGTATTAGCAAACAAACTTTGGTTGAGTTAGGCTCGAGGGCAGGAGCTCTCCGGCAGATGCTTCTTGACCTTCTGGAGGACCCAAATGAAATACGGCGGATGTGTATTATGGGAAGAAACTGTACACTTAATAAAGGAAACAATAATGTGGAATGCTCAGTGCCCTTAGAAAAGCAGGTTGCTGATGAGGAGGAGGAGGAAATTGAAATGCTTCTGGAAAATTATCTCCAAAGATGTGAATCTTGTCATGGTCAATCTGAAAGGCTTCTTGATTCTGCAAGGGAAATGGAGGATTCTATAGCTGTCAGTTTGAGCTCACGAAGACTTGAAGTTAGTAGAGTGGAATTGCTTCTCCAGGTTGGAACATTCTGTGTGGCAGTTGGTGCCCTTGTAGCAGGTATATTTGGCATGAACCTGAAGTCCTATCTTGAGGAACAAGTGTTTGCATTTTGGCTAACTACATCTGGGATCATTATTGGCGGCGTTATTATTTTTTTTCTTATGTATAACTACCTCAGAGCAAGAAAAATATTTTGA 1344 0.4457 MALTLTSTHLRFQPLLSRTNYVFFSDLTEFRSLETQSRDSLTPLLRRKISVTSLSALKPVKCSRSTEEKQWNETESVASDADEAVDESNGPNPIRTSSIEPQRIAGDSPSLGIREPVYEVVEVKSDGAVSTRKINRRQLLKSSGLRPRDVRSVDPSLFLTNSMPSLLVREYAILLNLGSLRAIAMQDCVLIFDYNRKGGQAFLDTLLPRLNPKNNNGGPSMPFEIEVVEAALLSRIQRLERRLMDLEPRVQALLEALPNRITGDILEQLRISKQTLVELGSRAGALRQMLLDLLEDPNEIRRMCIMGRNCTLNKGNNNVECSVPLEKQVADEEEEEIEMLLENYLQRCESCHGQSERLLDSAREMEDSIAVSLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLKSYLEEQVFAFWLTTSGIIIGGVIIFFLMYNYLRARKIF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02484 447 FunFam Magnesium transporter MRS2-11, chloroplastic 196 378 - -
Vifa1g02484 447 Gene3D - 113 194 - -
Vifa1g02484 447 MobiDBLite consensus disorder prediction 64 107 - -
Vifa1g02484 447 Coils Coil 236 256 - -
Vifa1g02484 447 CDD Mrs2_Mfm1p-like 120 446 IPR039204 -
Vifa1g02484 447 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 81 446 IPR039204 -
Vifa1g02484 447 Coils Coil 327 347 - -
Vifa1g02484 447 FunFam Magnesium transporter MRS2-11, chloroplastic 113 194 - -
Vifa1g02484 447 Gene3D Magnesium transport protein CorA, transmembrane region 195 378 - -
Vifa1g02484 447 MobiDBLite consensus disorder prediction 90 104 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02484 111 447 MRS2 Gene Family AT5G22830 82.789 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02484 K16075 - gmx:100808371 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02484 1 395478448 395489410 Vifa1g02484 1 395478448 395489410 ECH