Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02483 ATGGCGGAGGACCACAAAGATGCGACTGATTACAGTTCGGAGGATGAAGGAACTGAAGATTACAGACGCGGTGGATACCACAAGGTCCAGATTGGCGATACTTTCAAAAATGGCTGCTATGTCGTTCAGACTAAGCTTGGTTGGGGGCACTTTTCAACTGTTTGGCTCGCTTGGGATACTCATAATTTGCGATATGTTGCCTTGAAAATTCAAAAGAGTGCTCAGCACTACACTGAAGCAGCAATGGATGAAATAAAGATTCTCAAACAAATTGCTGAAGGGGATGTAGAGGATAAGAAATGTGTTGTGAAGCTTTTGGACCACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTCACACTTATCAAGTATAGTGATTATCGAGGTGTTCCCCTTCCCATGGTCAAAGAAATTTGTTACCATGTTTTGGTCGGTTTGGATTATTTACACCGCGAGCTCTCTATAATACACACTGATTTGAAGCCTGAGAATGTCTTGATTCTCTCTCCAATAGATCCATCTAAGGATCCTAGAAAATCAGGAGTTCCACTTGTACTTCCGAAAACCAAAGATAAGACTGTGTCCAAGAATGGGACCACAAATGGTAAAAGTTCGAATGGAGATCTAACCAAGAATCAGAAAAAGAAAATGCGTAAAAAGGCTAAAAAAGCAGCTCAGAAGGAAGGTCCCGAGGTAGCAGAGGAGGATACTGAAGCACCTGAGCAAGATGATTGTAGTAATGATGTGAAACCAAATGTAGAGAACGGTGAAGGTAAAACTAATAGTCCTGTAAGTTTAGATGAATCAGCAAAGACTTCTGAGATTCAGGATGTTCCACAAGGAAGTCAAGTTTCTAGGAGAGGTAGCCGCTCTACCAGAAAGAAGTTGCTTGCTGCTGTTGATCTCAAGTGCAAACTGGTGGATTTCGGTAATGCTTGTTGGACGTATAAACAATTTACGAATGATATTCAGACAAGGCAGTATAGATGTCCTGAGGTTCTCCTTGGTTCCAAATACTCGACTCCAGCTGATATGTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTCGATCCTCACAGTGGTGATAACTATGACAGGGATGAGGACCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTTAGCGGCCACTATTCCCGGGACTTTTTCAACAGATGTGGTGATTTGAGACACATTCGTCGGTTGCGGTTCTGGCCTATCACTAAGGTGTTGACGGAGAAATATGATTTCAGTGAGCAAGATGCAAGTGACATGGCTGACTTCCTTGTTCCATTACTCGACTTTGTTCCTGAAAAGAGGCCAACGGCTGCTCAGTGCCTCAATCATCCGTGGATGAGTGCAGGTCCTCGGACTCCCGAGCCCTCTTTGACTAACATGCAACCTGACGCTGTTATTGGAGAAACGTCTCTAAAGTCTAGGGAAAAGACCGAGCATGAGGCTGTTGAAGTTGGTATGGGAAATATGGCGATTGATGGAACTCAAAAGCCACTCAAAGATTTTCAACCTACAAAGGCATTGGAGTAG 1617 0.4354 MAEDHKDATDYSSEDEGTEDYRRGGYHKVQIGDTFKNGCYVVQTKLGWGHFSTVWLAWDTHNLRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDVEDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICYHVLVGLDYLHRELSIIHTDLKPENVLILSPIDPSKDPRKSGVPLVLPKTKDKTVSKNGTTNGKSSNGDLTKNQKKKMRKKAKKAAQKEGPEVAEEDTEAPEQDDCSNDVKPNVENGEGKTNSPVSLDESAKTSEIQDVPQGSQVSRRGSRSTRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADMWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALSGHYSRDFFNRCGDLRHIRRLRFWPITKVLTEKYDFSEQDASDMADFLVPLLDFVPEKRPTAAQCLNHPWMSAGPRTPEPSLTNMQPDAVIGETSLKSREKTEHEAVEVGMGNMAIDGTQKPLKDFQPTKALE 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02483 538 SMART serkin_6 40 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02483 538 MobiDBLite consensus disorder prediction 204 220 - -
Vifa1g02483 538 CDD STKc_SRPK 29 476 - -
Vifa1g02483 538 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 5 498 - -
Vifa1g02483 538 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Vifa1g02483 538 MobiDBLite consensus disorder prediction 265 299 - -
Vifa1g02483 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vifa1g02483 538 MobiDBLite consensus disorder prediction 180 303 - -
Vifa1g02483 538 FunFam CMGC/SRPK protein kinase 26 125 - -
Vifa1g02483 538 ProSiteProfiles Protein kinase domain profile. 40 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02483 538 SUPERFAMILY Protein kinase-like (PK-like) 35 486 IPR011009 -
Vifa1g02483 538 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Vifa1g02483 538 Gene3D Transferase(Phosphotransferase) domain 1 123 477 - -
Vifa1g02483 538 Pfam Protein kinase domain 40 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02483 538 Pfam Protein kinase domain 313 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02483 538 FunFam Serine/threonine-protein kinase SRPK-like protein 306 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02483 Vifa-Chr1 395432238 395435841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02483 7 526 EF-hand Containing Proteins AT5G22840 70.152 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vifa1g02483 Pkinase 7.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02483 K08832 - gmx:100791829 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02483 1 395432238 395435841 Vifa1g02483 1 395432238 395435841 ECH
Vifa1g02483 1 395432238 395435841 Vifa6g00447 6 174753726 174757336 PCT