Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02476 ATGGCTTCTCTTCTCAACGGCAGGCTATCTTCCTTACACCTCCAACACAGCCGCGAACCCCCCTTCTCAAAATTCCCCCACCACCCCAACCACTTCCCAATCCACAAAACCCCCAAATCCAAACCCCTCAAGATCCGCGCGATGTCAGCTACGAACCCCGCAACACCTCCTCCGATGACAAAATCCGCGAAATCCTCCGCAACCACGACTACGACGCAAAATTCGGCTTCAACATCGACATCGATTCCTTCACCATCCCAAAAGGACTTTCCCACGAAACAATTAGACAACACTTATCCATCCATCAATTTCCAAGATATTTGTTATTATTCCGCTCCGAAGAAGAAACCCTCTCTTAACAGCTTAGAAGAAGCCGATCCCGAGCTTCTCAGGTACTTCGATAAACTCGGTGTTCCGTTAAACGAACAGAATCGCTTAGCGAATGTCGTCGTGGATGCGGTTCTTGATAGTGTTTCGATTGCAACTACTCATAGGAAGACACTTGAGAAAGCTGGGGTTATTTTTTGTCCGATTTCCGAGGCCATTCGAGAGTATCCTGATTTGGTTAAGAAGTATTTAGGTAGAGTTGTTCCTAGTGAGGATAACTATTACGCCGCGTTGAATGCCGCTGTTTTTAGCGATGGATCCTTTTGTTATATTCCCAAGGATACTAAGTGTCCCATGCAGATTTCGACTTATTTTAGGATTAACGCATTGGAGACGGGGCAATTTGAGAGGACGTTGATTGTTGTGGAGGATAGAAGCTCCGTGGAGTATTTGGAAGGATGTACTGCGCCTTCGTATGATAAGAATCAGCTTCATGCCCACTGTCCGCATACGCCATTTCCGTTCAGTACCCTTACGACCACCACCAAAACCGCAACTCTCCCTCCCGGCCCACTCCACATCCCCATCCTCACAAGCCTCCTATGGCTCCGAAAATCCTTCTCCCAACTCGAACCTTTTCTCAAAACCCTTCACGCCAAACACGGTCCCATCATCGCTCTCAGAATCGGTTCTCGACCTTCCGTTTTCATCACCGACCATTCTCTCGCTCACCACGCTCTCGTTCATAACTCGTCAATCTTCTCCGACCGCCCTAAAGCACTTCCCATCGGAAAGCTCATGTCCAGCAACCAGCACAATATCAGTTCCGCTTCTTATGGTGCCACGTGGAGAACCCTCCGCCGTAACCTGGCCTCCGAGATGCTCCATCCGGCGAAAGTCAAATCTTTCTCAGAAATCCAGAACTGGGTCCTTGACACTCTCATCAACCGTCTCAAAACGGCTTCGGAGTCTGAATCCTTTATGGCTGTTCCCCACTTTCATTATGCAATGTTCTGTTTACTTGTTTTTATGTGTTTTGGTGAAAGAGTTAGCGATGAGAAAGTTAATGAAATTGAACGCGCATATTCAACTGTTGGAACTCTTGACTACATGGCTCCTGAAGTTTTGCTCAAGAAGGGGTATGTAATAGAGTGTGATTGGTGGTCTCTTGGGGCAATCACGTATGAGATGCTTGTTGGATATCCTCCATTCTGTTCTGATGATCCAAGGATGACCTGCCGGAAGATTGTGAATTGGAAAGCATGCCTGAAATTCCCTGAAGAACCCAAGATATCATCTGAAGCTAGGGTTCTCATATGTAGCTTATTATGTGATGTTGACACAAGACTAGGAACAAGGGGAGTAGACGAAATAAAGATACTAGATCTTCTAAAGTACGTGCTTTGGTTTCCACAAGCAGCTGAAGCTATAAGCCAAGATCTGCATGCAAAGATGGTGAATGAAACAGAAAAAGATGGTTTTGGAAGTGTAGAAGTAGCGGTCATCAGCATGCTTTTACATACAGGTTTTCAAGTTGTGAAATGGTTTTTAGCTAAAATATAG 1890 0.4598 MASLLNGRLSSLHLQHSREPPFSKFPHHPNHFPIHKTPKSKPLKIRAMSATNPATPPPMTKSAKSSATTTTTQNSASTSTSIPSPSQKDFPTKQLDNTYPSINFQDICYYSAPKKKPSLNSLEEADPELLRYFDKLGVPLNEQNRLANVVVDAVLDSVSIATTHRKTLEKAGVIFCPISEAIREYPDLVKKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKDTKCPMQISTYFRINALETGQFERTLIVVEDRSSVEYLEGCTAPSYDKNQLHAHCPHTPFPFSTLTTTTKTATLPPGPLHIPILTSLLWLRKSFSQLEPFLKTLHAKHGPIIALRIGSRPSVFITDHSLAHHALVHNSSIFSDRPKALPIGKLMSSNQHNISSASYGATWRTLRRNLASEMLHPAKVKSFSEIQNWVLDTLINRLKTASESESFMAVPHFHYAMFCLLVFMCFGERVSDEKVNEIERAYSTVGTLDYMAPEVLLKKGYVIECDWWSLGAITYEMLVGYPPFCSDDPRMTCRKIVNWKACLKFPEEPKISSEARVLICSLLCDVDTRLGTRGVDEIKILDLLKYVLWFPQAAEAISQDLHAKMVNETEKDGFGSVEVAVISMLLHTGFQVVKWFLAKI 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02476 629 Gene3D Cytochrome P450 289 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02476 629 Pfam SufBD protein N-terminal region 160 227 IPR045595 -
Vifa1g02476 629 MobiDBLite consensus disorder prediction 17 95 - -
Vifa1g02476 629 SUPERFAMILY Protein kinase-like (PK-like) 468 578 IPR011009 -
Vifa1g02476 629 Pfam Cytochrome P450 297 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02476 629 MobiDBLite consensus disorder prediction 53 95 - -
Vifa1g02476 629 PANTHER FES CLUSTER ASSEMBLY PROTEIN SUF 93 276 - -
Vifa1g02476 629 SUPERFAMILY Cytochrome P450 297 471 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g02476 629 SUPERFAMILY Stabilizer of iron transporter SufD 74 276 IPR037284 -
Vifa1g02476 629 FunFam Non-specific serine/threonine protein kinase 469 592 - -
Vifa1g02476 629 Pfam Protein kinase domain 467 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02476 629 ProSiteProfiles Protein kinase domain profile. 182 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02476 629 SMART serkin_6 377 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02476 Vifa-Chr1 395104964 395108507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02476 296 468 Cytochrome P450 AT1G64950 51.445 2.96e-59 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vifa1g02476 p450 6.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02476 - - cave:132181202 350.903