Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02452 ATGTCAAATCAATATCAACATGTGGATAAGCTGCTTATACAGAAGCAGGAAATGTTGTTGATCAAACCACTGGAGCCATCAGAACAGGAGAAAAAGACAATAGAAAAGTACAATACTAAGTTAAAAGTTGCTTATACGATCCTTGAGAAGGGATATACTGGTGGAACTGTTATGAGTGTAATCATAGCTCTTATGACTGGTGGAATGTCATTGGGTCAGACATCTCCATACATAGATGCATTTACTATAGAACAAGCAACCGCGTATAAAATGTTTGAGGTGTTTAAAAGAAAGTTGAAAATTGATGCATACGCAAGTGGTGAAATCTTGGAGGACATAAAGGGAGATATTGAACTCAAAAATGTTTACTTCATATACCCTGTGAGGCCGGACATGCAGATATTTGCTGGATTTTCATTGTTTGTTCCAAGTGGCACAACTACTGCTTTGGTGGGTCAAACTGGAAGTGGAAAGTCTACTTGTGGAACTAAACAAGAAAGATTGTTAGGAACCCCTTGCAATGATGATCATCTCAGTCCCGGATCTGTTTTAGAAGCTTCATTTTCTTCCCGTATGTTCTGTGATGTATACAGTGGAATATTGGAGATTATAAACAAACCAAAGTTTTATGGTTTTGAAGACACAAAGAGTGCATGTTGTGGACTTATAATTCAATCTATTTGCTTATTCTATCTCTGCAAGTAA 705 0.3702 MSNQYQHVDKLLIQKQEMLLIKPLEPSEQEKKTIEKYNTKLKVAYTILEKGYTGGTVMSVIIALMTGGMSLGQTSPYIDAFTIEQATAYKMFEVFKRKLKIDAYASGEILEDIKGDIELKNVYFIYPVRPDMQIFAGFSLFVPSGTTTALVGQTGSGKSTCGTKQERLLGTPCNDDHLSPGSVLEASFSSRMFCDVYSGILEIINKPKFYGFEDTKSACCGLIIQSICLFYLCK 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02452 234 Gene3D - 107 161 IPR027417 -
Vifa1g02452 234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 162 IPR027417 -
Vifa1g02452 234 PANTHER ABC TRANSPORTER B FAMILY 45 161 IPR039421 -
Vifa1g02452 234 Gene3D ABC transporter type 1, transmembrane domain 45 106 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02452 Vifa-Chr1 393042740 393044352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02452 54 168 Calmodulin-binding Proteins AT2G36910 43.966 3.83e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02452 K05658 - gmx:100801771 182.956