Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02449 ATGGCCAAAGGAACCGATTCCAACGAGTTTATGGTTCATTCTAGGGTTCGAACTGGTCTCAAGAGAGAGTTTGCGTTTGCAATGAAGGCTCAATCTGAGATCGACGGTTCGTTAGGTCGAACCCGTGGTGGTAGTAAGAACCGGAATGAGCCGCCGGTTCAGGTTTCTCCGGTTGGGAAAAGGGCCAGGAAAACCGGTTCGGGGAAGATTGTTGAGGATGTGGCTGGTGGTGGGTTGAGTGAGGAAGAGGCTAAGAGTGATGTTGTGGATCTTGGTAGCGATGATGAACCCAAGAATCTTGCTGGGGAATTGGAATCGGTTTTGAATGAACCTAGGGTAGATAAAATAGATATTGAAATAGAAACTGTTAAACCTAATATTTCTGAAACCCTTGAAACCCTTGAGGAACCCAGAGAGGAAAATTGTAATCTTGGTGTTAAGGGTGGTAATGTTAAGAAAAAGAAGGTACCTTTGGAGAAAACAATGAGGAGGTTTACGAGATCAGCATTGAAGGAAAAAGATGAGGAAACTAAGGTTTTGGATGATAATGTTGTTGGAATTGAGGATGATCTTGTTGAAAGGGAAAAAACCAAGGTTTTACCTGTTATGGCGACTCCGGCGCCAAGAAAATTGTGTAAATCTTCTGTGAAGAGGTTTCCTATTAAGCTGAAAGATCTTATGGCTACAGGGATTCTTGAGGGGTTGAAGGTGAAATATGTCAAGGGGCAGAAGGCGCGTAAACCTGGAGAAAAAGATTTTCGAGGAGTGATTAAAGATGCTGGGGTTTTGTGCTTTTGTGATAGTTGTAAGGGGGTTCAGGTTGTCACGCCGACAGTTTTTGAGTTGCATGCTGGTAGTGCTAATAAACGTCCTCCGGAGTATACTTACCTTGAGAATGGAAGAAACCTTCGCGAAGTCATGAATGCATGTTCATGTGTTTCGTTGGACATGTTGGATGAAGCTGTCCAAATGGTCCTTGGTGATTTCACTTTGCAGCAATCTACTATTTGTTTCAACTGCCGAGGGTTAATTTCTGAATCTAGTAATGGTGTGTCAAAACTAGTATGCAATTCATGCATGGAGTTGAAAGATACTCAAGCTAACCTCCAAGCAGCTACATCATGCAGTAAAAATATTTCCACCGTAGTTCAACCCAGTTTACCAGAAACAATAGCAGTTTCAGAATCATTAAATACTGAGAAGGCGGTTCCAAAGTCATTAAATACTGAGACGGTGGTTCCTAACTCATCAAACAATGACACGGTGGTTCCTAACTCGTCAAACACTGACACGGTGGTTCCTAACTCGTCAAACACAGACACGGTGGTTCCTAACTCGTCAAACACAGACACGGTGGTTCCTAACTCGTCAAACACAGACACGGTGGTCCCTAACTCATCAGACCCCGAGATGGTAGTTTCAGAGTCATCAAACTCGCAGATTATTCCAAAGGCATCGAACACTGGCATGAAGCAGAGTGCATCTCGTGGCAAGAGTCGGGGAAAAATAACTAGAAAGGATCTACGGTTGCATAAGTTGGTATTTGAAGATGACGTGTTACCGGATGGAACTGAAGTAGCTTACTATTCTCATGGAAAGAAACTATTGGTCGGTTACAAAAAGGGATACGGAATTTTTTGTACCTGTTGCAATGCGGAAGTCAGTGCATCTCAGTTTGAAGCACATGCTGGATGGGCATCTCGACGCAAGCCTTACCTGCACATATATACCTCTAATGGAGTCTCGCTACATGAGTTGTCCCTTTCTCTATCGAAAGATCGTAGATTTTCTGCCAGTGATAATGATGACCTTTGCAGCATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGTCCAAGGGCTTTTCACATAGACTGTGTGCCTCTGCCATGTATTCCTAGTGGTACTTGGTATTGTAAATACTGCCAGAATAATTTCCTGAAGGAGAGTAATGTGGAGCGCAATGTGAATGCTCTGGCAGCTGGAAGGATTGCAGGTATCGATCCTTTAGAACAGATTAACCGAAGATGCATTCGCATTGTCAAAAGTGTAGCTGTTGATCACGGGGGATGTGCCTTGTGTGGATGTCATGATTTCGTTAAATTATTTGGTCCTCGAACAGTGATTATTTGTGATCAGTGTGAAAAGGAGTATCATGTTGGGTGTTTGAAGGAACATAACATGCAGAACCTAGAGGAATTGCCTGAAGGGAATTGGTTTTGTAGCACTGGTTGCAGTCAAATTCATTCTTCTCTAGTGAATTTGGTTGCTTCTGGGGAGAATTATCTCCCTGATTCTAGTCTAAGTTTGATCAAAAGGAAGTGTAAAGAGAAAGGTGTAGACACTGGCGTCAAAGAGAAAGATGCAAACACTGGCGTTGTAGATAAAGGTGCAGATGCCGTTGTTGTAGATAAAGGTGCAGACGCTGGCGTTGAAGAGAAAGGTGCAGACACTGCCGATGAAGAGAAAGGTGCCGACACTGTTGATGAAGAGAAAGGTGGGTTAGATACTGTTGATGAAGACAAAGGTGGGTTAGATACTGTTGTTGAAGGTGTAGACCCGAACGTCGAAGAGAAATGTTTAGACACTGATGTTGGTCCTGAAATTAAATGGAGGGTTCTGAATTGGAAATTAGTTGTATCTGATGAAAATAAGCAATTGTCTGACGAATATAGGCAAGTGCTTTCGAAGGCTGTTTCCATCTTCCATGAGAGGTTTGATCCTATAGTTGATTCTTCTTCTGGCCGCGATTTCATTCCGACAATGCTGTTTGGAAAGAACATTCGCGGACAAGATTTTGGTGGAATGTACTGTGCAGTGCTCACTGTCAATCAAGTTGTTGTTTCTGCTGGAGTATTTCGTGTTTTTGGGCCAGAAGTCGCTGAACTTCCCTTGGTGGCGACAGTTGCTGAGTACCAAGGACAGGGGTACTTTCAATGTCTATTCTCTTGTATTGAGAGACTACTTGGACATCTTAGCGTGAAAACGCTTGTCCTACCGGCTGCTGACGAAGCTAAATCAATATGGACCAACAAATTTGGGTTTACAAAGCTCGAGCACGATGAGATCAACAATTACAGGAGATTTTATCATATGATGATCTTTCAAGGGACCTCAGTACTACAAAAGCCTGTTCCTGGACTACCAAGTGCTTCTCAGGAGAATGTGTAA 3177 0.4315 MAKGTDSNEFMVHSRVRTGLKREFAFAMKAQSEIDGSLGRTRGGSKNRNEPPVQVSPVGKRARKTGSGKIVEDVAGGGLSEEEAKSDVVDLGSDDEPKNLAGELESVLNEPRVDKIDIEIETVKPNISETLETLEEPREENCNLGVKGGNVKKKKVPLEKTMRRFTRSALKEKDEETKVLDDNVVGIEDDLVEREKTKVLPVMATPAPRKLCKSSVKRFPIKLKDLMATGILEGLKVKYVKGQKARKPGEKDFRGVIKDAGVLCFCDSCKGVQVVTPTVFELHAGSANKRPPEYTYLENGRNLREVMNACSCVSLDMLDEAVQMVLGDFTLQQSTICFNCRGLISESSNGVSKLVCNSCMELKDTQANLQAATSCSKNISTVVQPSLPETIAVSESLNTEKAVPKSLNTETVVPNSSNNDTVVPNSSNTDTVVPNSSNTDTVVPNSSNTDTVVPNSSNTDTVVPNSSDPEMVVSESSNSQIIPKASNTGMKQSASRGKSRGKITRKDLRLHKLVFEDDVLPDGTEVAYYSHGKKLLVGYKKGYGIFCTCCNAEVSASQFEAHAGWASRRKPYLHIYTSNGVSLHELSLSLSKDRRFSASDNDDLCSICQDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNNFLKESNVERNVNALAAGRIAGIDPLEQINRRCIRIVKSVAVDHGGCALCGCHDFVKLFGPRTVIICDQCEKEYHVGCLKEHNMQNLEELPEGNWFCSTGCSQIHSSLVNLVASGENYLPDSSLSLIKRKCKEKGVDTGVKEKDANTGVVDKGADAVVVDKGADAGVEEKGADTADEEKGADTVDEEKGGLDTVDEDKGGLDTVVEGVDPNVEEKCLDTDVGPEIKWRVLNWKLVVSDENKQLSDEYRQVLSKAVSIFHERFDPIVDSSSGRDFIPTMLFGKNIRGQDFGGMYCAVLTVNQVVVSAGVFRVFGPEVAELPLVATVAEYQGQGYFQCLFSCIERLLGHLSVKTLVLPAADEAKSIWTNKFGFTKLEHDEINNYRRFYHMMIFQGTSVLQKPVPGLPSASQENV 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02449 1058 ProSitePatterns Zinc finger PHD-type signature. 605 644 IPR019786 -
Vifa1g02449 1058 ProSiteProfiles Zinc finger PHD-type profile. 602 647 IPR019787 -
Vifa1g02449 1058 MobiDBLite consensus disorder prediction 811 848 - -
Vifa1g02449 1058 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 591 670 IPR013083 -
Vifa1g02449 1058 MobiDBLite consensus disorder prediction 31 68 - -
Vifa1g02449 1058 FunFam PHD finger family protein 870 1046 - -
Vifa1g02449 1058 SMART PHD_3 695 748 IPR001965 -
Vifa1g02449 1058 SMART PHD_3 604 645 IPR001965 -
Vifa1g02449 1058 SUPERFAMILY FYVE/PHD zinc finger 689 745 IPR011011 -
Vifa1g02449 1058 SUPERFAMILY FYVE/PHD zinc finger 592 646 IPR011011 -
Vifa1g02449 1058 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 750 IPR013083 -
Vifa1g02449 1058 Gene3D - 875 1045 - -
Vifa1g02449 1058 MobiDBLite consensus disorder prediction 402 478 - -
Vifa1g02449 1058 Pfam PHD-finger 605 646 IPR019787 -
Vifa1g02449 1058 PANTHER AUTOIMMUNE REGULATOR 40 1047 - -
Vifa1g02449 1058 Pfam Tify domain binding domain 538 586 IPR032308 -
Vifa1g02449 1058 Pfam Tify domain binding domain 255 310 IPR032308 -
Vifa1g02449 1058 CDD PHD1_AIRE 604 644 - -
Vifa1g02449 1058 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 591 668 - -
Vifa1g02449 1058 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 936 1022 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02449 Vifa-Chr1 392224682 392231586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02449 216 776 PHD Transcription Factor Family AT2G36720 41.103 2.10e-139 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa1g02449 TDBD 9.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02449 - - psat:127086555 1796.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02449 1 392224682 392231586 Vifa1g02449 1 392224682 392231586 ECH
Vifa1g02449 1 392224682 392231586 Vifa6g00494 6 191249703 191255158 PCT