Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02443 ATGTCTGGAGAATCCGCCACCGCTATTCACAAGGGTCAAGTTGATCTCTTAGGCTTCATAGATTGGATTGGTGTTGAATGCCTCAATCAAAGCACCACTCTCTCTGTTTCCAGTGCTATCAAACAGGGTTATAGAGAAGATAAAGGTTTTCATCTAGAAATTGATGCATATGAACAGTTTTTGCTTTATATTGCTTTCACCCAAGTTATTAAACTTTATTCCATTATTGTCAAAGGTCCTGAAGATAAAGGAGGTGCTGAAAGGGAACAAGGATTACTTCAGATACTGACTGAGATGGACGGATTCAAAGTTTCCACAGCACAGGTGCTTGTGATAGGTGCTACAAATAGATTGGATATTATTGATCCTGCTCTTTTGAGGAAGGGTCGTTTCGACAAGATCATTAGAGTTGGTTTGCCTTTAAGAGATGGAAGACTTGCCATTTTGAAGGTGCATGCTATGAATAAGTATTTTCGCTCAGAAGAAGAAAAAGATACTCTGCTTAACGAAATTGCAGAGCTAACAGAAGATTTTACTGGGGCAAAGCTGCAGAATATACTGAACGAAGCTGGAATTTTAACGGCCAGGAAGGATTTGGATTATATTGGGCGTGACGAATTGCTTGAGGCATTAAAAAGGCAAAAAGGAACATTTGAAACAGGGCAAGAGGACACTACAGAAATTCCTGAAGAACTGAGACTGAGATTGGCATATAGAGAAGCAGCTGTTGCTGTTATTGCATGTTATTTTCCTGAGCCACTCCGCCCTTTTGTTGAGAGATTTTGCTTGAAAAGGGGAAGATCAAAGCTGAGGATAAATAGGAAAGGTTGGTTAAATTGCAAGGCTAACTCAGATGAAAGGTTGAGCTGTATGTCCATTGTGTATAATGAACTGAACTGGATATGGTTAATTTTGTATATATGCATGGCTTCAAAAACCAACAAGGTATCTATTGTTAAACCTTGGACTACTGGAATAAGTGGACAGCTTCAAAAAGCACTTGTGACAGGTGTGCCAAAGCTAAAGAGAATAGATCTTGAAGTAGCATGTGAAGATTTTAGTAATGTAATCGGTAAATCACCGATTGGTACGTTGTACAAAGGAACTTTATCTAGTGGAGTTGAAATTGCTGTAGCTTCTGTTTCTCTGAAATTATCCAAGACTTGGACAAAGAATTTAGAAGCTCAGTTTAAGAACAAGATAGACACACTATCAAAAGTGAACCATAGGAATTTTGTCAATCTTATTGGATATTGTGAAGAAGAAGAACCTTTTACCAGAATGTTGGTTTTTGAATATGCGCCAAATGGAACACTATTCGAGCATTTACACGTGAAAGAAGCTGAGCACTTGAACTGGGGACCGAGACTTAGAATTGCGACAGGAATGGCTTACTGCCTACAATACATGCATGGATTAGACCCTCCTGTGGCCCTTACCAATCTGAGTTCTTCAACTGTCCATCTAACAGATGATCATGCAGCAAAAATCTCGGATTTGAGTTTCTCCCGCGAAACAGATTCATCTGAAAAGAAACCTGATGGTAGAAAAGACATTGATATTGATATGACGCAATCAACAAGTCCAGCGAGTAATGTTTATAGCTTTGGTGTTTTGTTATTCGAGATAGTAACCGGTAGGATTCCTTATTTGCTGGATAATAGCTCAGCTGAAAACTGGGCAGCACATTATCTAAAATGGGACAAACCTATGAAGGAAATGGTGGATGCAACTCTAGCATCTTACCAAGAGAATCAGGTGGAACAAGTTGCGGAGTTGATAAAAGATTGTGTGGATCCTGATTCAGAGAAGAGACCGAGAATGAATGAAGTGAGTGAGAGATTGAGAGAAATAACGAAAATGTCGTCTGAGTTTGTAGTTCCTAAACATTCTCCACTTTGGTGGGCTGAGCTTGAGATTTCTTCTGCATAA 1932 0.3929 MSGESATAIHKGQVDLLGFIDWIGVECLNQSTTLSVSSAIKQGYREDKGFHLEIDAYEQFLLYIAFTQVIKLYSIIVKGPEDKGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDIIDPALLRKGRFDKIIRVGLPLRDGRLAILKVHAMNKYFRSEEEKDTLLNEIAELTEDFTGAKLQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDTTEIPEELRLRLAYREAAVAVIACYFPEPLRPFVERFCLKRGRSKLRINRKGWLNCKANSDERLSCMSIVYNELNWIWLILYICMASKTNKVSIVKPWTTGISGQLQKALVTGVPKLKRIDLEVACEDFSNVIGKSPIGTLYKGTLSSGVEIAVASVSLKLSKTWTKNLEAQFKNKIDTLSKVNHRNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHVKEAEHLNWGPRLRIATGMAYCLQYMHGLDPPVALTNLSSSTVHLTDDHAAKISDLSFSRETDSSEKKPDGRKDIDIDMTQSTSPASNVYSFGVLLFEIVTGRIPYLLDNSSAENWAAHYLKWDKPMKEMVDATLASYQENQVEQVAELIKDCVDPDSEKRPRMNEVSERLREITKMSSEFVVPKHSPLWWAELEISSA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02443 643 FunFam Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic 140 223 - -
Vifa1g02443 643 ProSitePatterns AAA-protein family signature. 109 127 IPR003960 GO:0005524|GO:0016887
Vifa1g02443 643 SUPERFAMILY Galactose-binding domain-like 6 83 IPR008979 -
Vifa1g02443 643 Gene3D Transferase(Phosphotransferase) domain 1 434 629 - -
Vifa1g02443 643 MobiDBLite consensus disorder prediction 500 521 - -
Vifa1g02443 643 Gene3D PITH domain 2 98 IPR037047 -
Vifa1g02443 643 FunFam Inactive receptor-like serine/threonine-protein kinase 325 433 - -
Vifa1g02443 643 Pfam PITH domain 16 82 IPR010400 -
Vifa1g02443 643 ProSiteProfiles Protein kinase domain profile. 351 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02443 643 Pfam Protein tyrosine and serine/threonine kinase 354 615 IPR001245 GO:0004672|GO:0006468
Vifa1g02443 643 Coils Coil 157 184 - -
Vifa1g02443 643 Gene3D Phosphorylase Kinase; domain 1 328 433 - -
Vifa1g02443 643 SUPERFAMILY Protein kinase-like (PK-like) 335 615 IPR011009 -
Vifa1g02443 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 221 IPR027417 -
Vifa1g02443 643 Gene3D - 140 224 - -
Vifa1g02443 643 MobiDBLite consensus disorder prediction 500 524 - -
Vifa1g02443 643 Pfam AAA+ lid domain 168 208 IPR041569 -
Vifa1g02443 643 PANTHER PROTEIN MALE DISCOVERER 2 301 642 - -
Vifa1g02443 643 ProSiteProfiles PITH domain profile. 5 190 IPR010400 -
Vifa1g02443 643 Pfam ATPase family associated with various cellular activities (AAA) 82 138 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02443 Vifa-Chr1 391863561 391866906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02443 346 611 Receptor kinase-like Gene Family AT1G67720 35.000 1.02e-38 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vifa1g02443 PK_Tyr_Ser-Thr 3.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02443 - - gmx:100807163 478.018