Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02435 ATGCATATGAGAGCTCATGGGGATGAGTACAAGAGTAGTGCAGCATTGAGCAATCCAATTAATAAGAATAAAGACTATTTGATGAGTATGAAAAACAAGAAATATTCATGTCCTCAAGAAGGGTGTAGATGGAATCAAAAGCATCTCAAGTTTCAACCATTGAAGTCTTTGATTTGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCCAAAATGTACGTGTGCAAGAGGTGTAATCAGAAGAACTTTTCTGTACTTTCTGACTTGAGGACTCATGAGAAACATTGTGGTGATCTTAGGTGGCAGTGCTCATGCGGCACTACTTTTTCTAGGAAAGATAAGCTTATGGGACATGTTGGTTTGTTTGTAGGACATCGTCCTGTTATCAATGGTTTGTCATATAGTAACTCACACAAATTAATGATCTAG 429 0.373 MHMRAHGDEYKSSAALSNPINKNKDYLMSMKNKKYSCPQEGCRWNQKHLKFQPLKSLICAKNHYKRSHCPKMYVCKRCNQKNFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLMGHVGLFVGHRPVINGLSYSNSHKLMI 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02435 142 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 130 IPR044300 GO:0010044|GO:0010447
Vifa1g02435 142 Gene3D Classic Zinc Finger 71 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02435 Vifa-Chr1 391247782 391248210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02435 1 128 C2H2 Transcription Factor Family AT5G22890 72.656 4.76e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g02435 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02435 - - psat:127082139 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02435 1 391247782 391248210 Vifa1g02435 1 391247782 391248210 ECH