Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g02431 | ATGTTCTCTAAAATGGATATGGAAGGAAGTATAGGCAATAACGAACCTCTGGCGAAAGGGAAGCGAACAAAACGAGGGATAAGGATGTTGTCGCCTTGCACCGTGGCGAATACCACGGTGACATCAAGTTGCTCAAGTGCTACCGGAGGTGGTGGCAGATCGTTTTCTTCCACCACTTTTGATAGCACTGAGGAGGAAGAGGAGGCTGACATGGCTAATTGTTTGATTCTCCTAGCCCAAGGAAGAACCGGAGGACAAGAGGATAATCAAAATCCACGTTGTCAAAACCACCATGATCAACAAGTTGGTGGTGGTTATAACAATATTATAACTGAAAAGGCAACAAGAAACGGTTTTGAAAGCTATGAGTGCAAAACTTGTAATCGTTTTTTTCATTCGTTTCAAGCGTTGGGTGGACATAGAGCAAGTCACAAGAAACCTAAGATGAAAGAAATCATTTCCGCAGGTGAATTCGAAGAAGAAAATAATCATTTTCATAACAAGAATGTTTCTCTTGTTCCTCCGGTTTCACTTGAATTAACGTGTGGTGGCAATCTAAACTTCCATGGCCATGGAAACAATATCAAACTCAATAGATCTAACAAGATTCATGAGTGTTCAATTTGCGGCGCGGAATTCACATCCGGTCAAGCATTGGGTGGTCATATGAGAAGACATCGAGCTTGTACTAACAAAAACAACAACAATAATAATAACAACAACAACGTTGGTGATATTCATGTTCATGTTAAGTCTCGGAATGTTCTAGAATTGGATCTTAATCTTCCGGCACCGGAGGAGGATCTCCGGGATTCAACTTTTCAGTTTCCGGCAATGGTGGGTTGCCATTATTAG | 855 | 0.4152 | MFSKMDMEGSIGNNEPLAKGKRTKRGIRMLSPCTVANTTVTSSCSSATGGGGRSFSSTTFDSTEEEEEADMANCLILLAQGRTGGQEDNQNPRCQNHHDQQVGGGYNNIITEKATRNGFESYECKTCNRFFHSFQALGGHRASHKKPKMKEIISAGEFEEENNHFHNKNVSLVPPVSLELTCGGNLNFHGHGNNIKLNRSNKIHECSICGAEFTSGQALGGHMRRHRACTNKNNNNNNNNNNVGDIHVHVKSRNVLELDLNLPAPEEDLRDSTFQFPAMVGCHY | 284 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g02431 | 284 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 61 | 269 | - | - | |
Vifa1g02431 | 284 | SUPERFAMILY | beta-beta-alpha zinc fingers | 121 | 226 | IPR036236 | - | |
Vifa1g02431 | 284 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 204 | 226 | IPR013087 | - | |
Vifa1g02431 | 284 | SMART | c2h2final6 | 122 | 144 | IPR013087 | - | |
Vifa1g02431 | 284 | SMART | c2h2final6 | 204 | 226 | IPR013087 | - | |
Vifa1g02431 | 284 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 124 | 144 | IPR013087 | - | |
Vifa1g02431 | 284 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 122 | 149 | IPR013087 | - | |
Vifa1g02431 | 284 | Gene3D | Classic Zinc Finger | 187 | 255 | - | - | |
Vifa1g02431 | 284 | Gene3D | Classic Zinc Finger | 100 | 171 | - | - | |
Vifa1g02431 | 284 | Pfam | C2H2-type zinc finger | 122 | 147 | - | - | |
Vifa1g02431 | 284 | Pfam | C2H2-type zinc finger | 204 | 228 | - | - | |
Vifa1g02431 | 284 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 206 | 226 | IPR013087 | - | |
Vifa1g02431 | 284 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g02431 | Vifa-Chr1 | 390626841 | 390627695 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g02431 | 56 | 284 | C2H2 Transcription Factor Family | AT2G28200 | 40.784 | 1.98e-50 | 166 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vifa1g02431 | zf-C2H2_6 | 2.3e-12 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g02431 | - | - | psat:127086554 | 414.846 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g02431 | 1 | 390626841 | 390627695 | Vifa1g02431 | 1 | 390626841 | 390627695 | ECH | |
Vifa3g00928 | 3 | 225900056 | 225900940 | Vifa1g02431 | 1 | 390626841 | 390627695 | ECH |