Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02431 ATGTTCTCTAAAATGGATATGGAAGGAAGTATAGGCAATAACGAACCTCTGGCGAAAGGGAAGCGAACAAAACGAGGGATAAGGATGTTGTCGCCTTGCACCGTGGCGAATACCACGGTGACATCAAGTTGCTCAAGTGCTACCGGAGGTGGTGGCAGATCGTTTTCTTCCACCACTTTTGATAGCACTGAGGAGGAAGAGGAGGCTGACATGGCTAATTGTTTGATTCTCCTAGCCCAAGGAAGAACCGGAGGACAAGAGGATAATCAAAATCCACGTTGTCAAAACCACCATGATCAACAAGTTGGTGGTGGTTATAACAATATTATAACTGAAAAGGCAACAAGAAACGGTTTTGAAAGCTATGAGTGCAAAACTTGTAATCGTTTTTTTCATTCGTTTCAAGCGTTGGGTGGACATAGAGCAAGTCACAAGAAACCTAAGATGAAAGAAATCATTTCCGCAGGTGAATTCGAAGAAGAAAATAATCATTTTCATAACAAGAATGTTTCTCTTGTTCCTCCGGTTTCACTTGAATTAACGTGTGGTGGCAATCTAAACTTCCATGGCCATGGAAACAATATCAAACTCAATAGATCTAACAAGATTCATGAGTGTTCAATTTGCGGCGCGGAATTCACATCCGGTCAAGCATTGGGTGGTCATATGAGAAGACATCGAGCTTGTACTAACAAAAACAACAACAATAATAATAACAACAACAACGTTGGTGATATTCATGTTCATGTTAAGTCTCGGAATGTTCTAGAATTGGATCTTAATCTTCCGGCACCGGAGGAGGATCTCCGGGATTCAACTTTTCAGTTTCCGGCAATGGTGGGTTGCCATTATTAG 855 0.4152 MFSKMDMEGSIGNNEPLAKGKRTKRGIRMLSPCTVANTTVTSSCSSATGGGGRSFSSTTFDSTEEEEEADMANCLILLAQGRTGGQEDNQNPRCQNHHDQQVGGGYNNIITEKATRNGFESYECKTCNRFFHSFQALGGHRASHKKPKMKEIISAGEFEEENNHFHNKNVSLVPPVSLELTCGGNLNFHGHGNNIKLNRSNKIHECSICGAEFTSGQALGGHMRRHRACTNKNNNNNNNNNNVGDIHVHVKSRNVLELDLNLPAPEEDLRDSTFQFPAMVGCHY 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02431 284 PANTHER ZINC FINGER PROTEIN ZAT5 61 269 - -
Vifa1g02431 284 SUPERFAMILY beta-beta-alpha zinc fingers 121 226 IPR036236 -
Vifa1g02431 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 226 IPR013087 -
Vifa1g02431 284 SMART c2h2final6 122 144 IPR013087 -
Vifa1g02431 284 SMART c2h2final6 204 226 IPR013087 -
Vifa1g02431 284 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Vifa1g02431 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Vifa1g02431 284 Gene3D Classic Zinc Finger 187 255 - -
Vifa1g02431 284 Gene3D Classic Zinc Finger 100 171 - -
Vifa1g02431 284 Pfam C2H2-type zinc finger 122 147 - -
Vifa1g02431 284 Pfam C2H2-type zinc finger 204 228 - -
Vifa1g02431 284 ProSitePatterns Zinc finger C2H2 type domain signature. 206 226 IPR013087 -
Vifa1g02431 284 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02431 Vifa-Chr1 390626841 390627695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02431 56 284 C2H2 Transcription Factor Family AT2G28200 40.784 1.98e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g02431 zf-C2H2_6 2.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02431 - - psat:127086554 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02431 1 390626841 390627695 Vifa1g02431 1 390626841 390627695 ECH
Vifa3g00928 3 225900056 225900940 Vifa1g02431 1 390626841 390627695 ECH