Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02426 ATGAATGATCACCAAGACTCACTAGTGTACACAGACAATTTTGAATTGCATGACTTCATTGACGATCCAAACTTTGATCAATTTATAGATTTAATTCGAGGAGAGAATCAAGATGCAATATGTAACTTTGGTTCTAACCTTATTAATGATTGTTTCATTGATAATCATCAACCTCTTTCAATTCCACTAAACCCATTATTTGATTCCAACAACAACAATATTTATAATATTGTGAATGTGTATGATCCAAGCTCTTCAACAATTGGCTCCTTCTCTTGTTATGATGAGGAGACTAAGGGAGAAGGAGAAAATAATGGTGACGATTCTCCGGAAACAACAACCACGAACTCGGTCGATGATGCCAAATCTAGGGCTAAAACCGATAGGTCCAAGACTCTCGTTTCGGAGAGGAGGAGGAGAGGTCGAATGAAGGATAAACTTTATGCATTGCGATCTTTAGTTCCCAACATTACAAAGATGGATAAGGCATCTATAATTGGAGATGCAGTATCATATGTGCATGATCTTCAAGCACAATCTAGGAAGTTGCAGGCTGAGGTTTCAGGGCTTGAAGCATCTTTATCCATGTCTGAAAATTATCAAGGATCAATTAACAACACCATGAATATTATTCAAAGCCATCCCATTTGCAAGAAAATTATCCAGGTGGAGATGTTTCAAGTGGAGGAAAGAGGTTACTATGCAAAAATAGTATGCAATAAAGGAGAAGGTGTTGCTGCTTCATTGTACAAGGCTCTTGAGTCTCTTGTGAATTTCAATGTTCAAAATTCAAACTTAGCTACCGTTTCTGACACTTTTCTACTTACATTTACATTGAATGTGAAAGGTTCTGAACAAGAAATGAATCTTCAAAATTTGAAGCTATGGGTGGCCGGAGCTCTTTTGAACCAAGGCTTTGAATTCATGCCATCCTTTTGA 939 0.3717 MNDHQDSLVYTDNFELHDFIDDPNFDQFIDLIRGENQDAICNFGSNLINDCFIDNHQPLSIPLNPLFDSNNNNIYNIVNVYDPSSSTIGSFSCYDEETKGEGENNGDDSPETTTTNSVDDAKSRAKTDRSKTLVSERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQSRKLQAEVSGLEASLSMSENYQGSINNTMNIIQSHPICKKIIQVEMFQVEERGYYAKIVCNKGEGVAASLYKALESLVNFNVQNSNLATVSDTFLLTFTLNVKGSEQEMNLQNLKLWVAGALLNQGFEFMPSF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02426 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Vifa1g02426 312 Gene3D - 118 193 IPR036638 GO:0046983
Vifa1g02426 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 204 IPR036638 GO:0046983
Vifa1g02426 312 MobiDBLite consensus disorder prediction 121 139 - -
Vifa1g02426 312 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 123 193 - -
Vifa1g02426 312 SMART finulus 133 182 IPR011598 GO:0046983
Vifa1g02426 312 Pfam Helix-loop-helix DNA-binding domain 135 177 IPR011598 GO:0046983
Vifa1g02426 312 MobiDBLite consensus disorder prediction 92 139 - -
Vifa1g02426 312 Coils Coil 173 193 - -
Vifa1g02426 312 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 17 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02426 Vifa-Chr1 389569233 389570490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02426 1 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 50.000 2.10e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g02426 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02426 K26214 - gmx:100805451 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02426 1 389569233 389570490 Vifa1g02426 1 389569233 389570490 ECH
Vifa1g02426 1 389569233 389570490 Vifa6g00510 6 196676686 196678160 PCT