Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02403 ATGAAGCTTCCGCGGAAAACCAAAGCGACGGAACCGCCGCCGGTTCCGAAGCGGCGAGGTCGGCCGCCGAAGCAGAGAAGAACAGAGGATGGAACGGTAACGGATGTTTTGAAGAAGCCTAAGCCGATTGTATTGATTGGACGATACGTTTTGAAGCAGTTTTCGAAACGCGTTCGAATCGGAAAAGTTGTGAGCTATGAAGTTGGTTTGTATAGAGTCGTGTTTGAAAACGGTGTTTCTGAGGATATGGATAGTGGTATTATTAGGAAGATTCTTTTGAAGGGTTGTGATTTCGATGGGGATTTGACTAGGAGGAAGAAGAAATTGGATGAAATGTTGTCGCGGAAGATCGATGAGGCGAAGGAGACGAAATCGTCTGAATTGCGTGCGGAAAATGAAAAGGAACGAGACGAAACGGGAGAAGTAACGGACGATTCCATGGATTTAGGTTTGAAAGCTGAAAAACGGATTGAATTACCAACGTTAGTTTTGCCGCCGAAGTTGCAGTTACCGCGGTCTTCGGGGACTATTGGTGTGCCGGAGAATTATGTTTCGCACCTGTTTTCAGTTTATGCATTTCTAAGGTCATTCAGCTATCGATTGTTTCTGAGTCCTTTTACTTTGGATGAATTCGTTGGTGCTCTTAACTGTCGAGTCGCGAATACGTTGCTTGATGCTGTTCATGTTTCTTTGATGCGTGCTTTGAAACGTAAGCTGGAGAATCTTTCCGCCGAGGGCTCAAAGATTGCATCAAAATGCCTAAGGTACACTGATTGGAGCTTGCTTGATGCATTGACTTGGCCTGTTTTCTTAGTTCAATATTTAACGGTTAACGGATACACTAAGGGGTCCGAGTGGAAAGGATTTTATAATGAGATTTTATGTGGCGAGTATTATTCATTGCCTGCAAGTAGGAAGTTAATGATATTGCAAATTCTATGCGAAGAGGTTTTGGAGTCCGAGGAGCTGAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGAAGAATTATGATGCTGAGGACATTCCTCATGCAGAAAATGAACCGAAAAGAGTACATCAACAACATGCCAAAACCGCTGATTGCCAGGATGAAGAATCTCTGAAGTCTGTTTCAAAATTAGATGCTGTGAACTTACCTGGTAATTCCGAGGATGAGGTTGACGATAATGGAGATGAATGTCGCCTCTGTGGCATGGAAGGGACCTTGCTCTGTTGTGATGGATGTCCCGCTGTTTATCATTCAAGGTGTATCGGTGTGATGAAGATGTATATACCAGAAGGGGAATGGTATTGTCCAGAGTGCAAAATAAATATGACCGAGCCTACAATTGCACGGGGAACATCTCTTAAAGGGGCTGAAATATTTGGAATGGATTTGTACGGGCAACTTTTCATGGGTACTTGCGACCACCTACTTGTGCTCAATGACAGCAGCAGTGAATTTTGTCTTAAATACTACAATCAGAATGACATTCCTGAAGTCATCCGAGTGCTTTATGCTTCCATGCAACATAGACATATATACTCCAGTATTTGCACAGCGATATTACAATATTGGAATATTTCAGAAAGCTTCATACTCCCATGTGTTCCAAATGGAGTACATATAAACTCAGAATGTTCAAAGATAGATGAAAACACCTCTGTTACATTACTTCCTCATGTGGTTGAAAATGACCATAATGGTGTTAGTTTGGGTAAAGCAGAAGATGGTCTAACATCTGTTAATGGGATTTGCAATGATAATATGGTCCCATCTCTTGATGCTTCGTTGGTTACCAGTAGTCCCACTCATGAAACTAGTGACAATACTATAACTAAGGAGTCCCCCAGCACGGATATGAAACTTCAGAAAGAAACTGCGACGAGTTCTGGTGTTCTTACAGTTAACCACCAGTCTGACACAAATTGCCCAAATCCTGATAACAGATCAACTGCGGCTATTCTTCCCAAGTGCTCCTCGGTAAGCAACCAATTTATTAATTATGGGCATGCAAAGGACATGGGGTTGCCTATGAATTTGTCTTTGCAAACTAAAGGTGATCAAACTGGTTTTGGAAAGGGCAAAGGAAATATAACTAATGATTTTGTGTATATGGGTTGCTCCTATAAACCTCAGTCATACATTAATTACTATATGCATGGTGATTTTGCTGCATCTGCTGCTGCTAACTTGGCCATTCTTTCTTCAGAGGATTCTAGATCAGAAGGTCACATGATTGACTTGAGGAGAGCTACATCTGAAAACACTAACTTGATAGCAAAAGCATTCTCACTAACAGTTTCACGCTTTGTTTGGCCAAGTTCTGACAAGAAGCTTGTGGAGGTTCCTAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCCTGCTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTATATGTGCTACCAAAAGCGCCGTGAGAACCTTTTCGGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATTGGCCCTACCATTGCAACATATGTCATATATATGGAGGAGAGCTTACATGGTTTAATAGATGGGCCATTTCTTAGTGGAAACTATAGAAGGCAATGGCGTGAACAAATGGAAAGGGCCACATCATTTAATAACATAATGCCCCTTTTACTTAAACTTGAAGAGAACATTCGCTCAATTGCTTTTTGTGGCGAATGGTTGAAGCTGACTGATGAGTGGTTGGTTGAATCTCTTACAATACGAAGAAGTGCTACATCTATTCTTGGAACAACACAAACACGTGCATCGTGCGACTTGGGTAGAAAACAACCTATCAAATATGTAGTTGACCCTCACCGTGAGAACTTTGGCTGGCGGAATAGCAAATATACCAAATCTGTGTTTCAGAAAGCTGCATTGCCAAAGTTCTTGGTCAGAAAAGCAGCCCGGCAAGGTGGTTCAAAGAAAATTTTGAGTATTATCTATCCTGACTCTGCTGTCTCTGAAATTCCTAAGAGAAGCCGACAGCTGGTTTGGAGAGCTGCCGTTCAAATGAGTAGGAACGCATCACAACTTGCACTTCAGGTTCGGCATCTGGATTTTCATATCAGATGGATTGATCTGATTCAGCCGGAGTATAACCTCCAGGATGGAAAAGTTCAAGATACTGAAGTTTCTGCTTTTAGAAATGCAAATATTTGTGACAAAAAACGTGAACAGGGAAAAACATTATATGATATAGATTTTGGGAGCCAAAAGCATGTTCCTTCTCGGGTATTGAAGAATGCTAAAATTGATCAAGGGCCAAAAAGAGATAAGTACTGGTTTCCCGAAACACGAACTCCTTTATATTTGATAAAAGAGTATGAAGTAAGAAATGAAAAAGAGCCATCTTATAAAGATAACTTTAATATTGCACCTCAATGGCACAAAAGGCGGTTGAATGCTATCTTCACGGACATATTTTCTTACCTCACTTACAAGAGAGACAATTTAGACCCGCCATCATGTTCTGTATGTAAGCAGGGTGTTTTTTTTAGGAATGCTCTCAAGTGCAGCGCATGTCAAGGTTATTGTCACGAGGGCTGTTCAATAATTCCAACTTTCCCTACATATACAGATGTTGAGTTGTTGACCACATGCAAACAATGTTATCACACCAGATTACTTACTCTAAAAGAAACCAATAACAAGTCTCCAACCAGTCCCTTATTGTCAAAAGGACATGAACACAGCCCCTTGACAATTTTGAAGGGACTAAAGCCTAAATGTGATAATCAAATACTGTTATCCACCAGGGCAAAGGATTGTCGATCTGACATGGAAAAAGTTGCCGCATATTCCTCTCTGGAATCAAAAAGCAGTCGCAGAAAATCTTCTTGGGGTATTATATGGAAAAAGAATAGCAGTGAAGATTCAGGCCTTGATTTCAGGCTAAAAAAGATAATTCTGAAGCGGCGTACAAGTTTGCCTCAATTGGAACCTGTTTGTCACTTGTGCCAAAATTCATATAGGCCCGATCTAATGTATATCGGCTGTGAAACATGTACCAGGTGGTATCATGCTGAAGCTCTTGAACTTGAAGAGTCCCAAATATTTTCTGTGCTGGGCTTCAAATGTTCCAGGTGTCGCAAGATAAAGTCACCTGCGTGTCCTTACTCCCAGGCTTCCCAGAAAAAAGATTCTGGAGCAGATTCTGGTTCTGGAACACTAGCTGATGCAATAGCAAGTGAGCCTGATACGGCGATCTTTGCAGAGGAGGTTTCTAAACGCAGAACACTAGCTGACGCAAGAGCAAATGAGCCTGATACCCCAATCTTTCCTGCAGAGGAGGTTTATGACGCAAGAGCAAGTGAGCCTGATACGCCGATCTTTCCTGCAGAGGAGGCTTCTAAACGCATAACACTAGCTGACGCGAGAGCAAGTGAGCCTGATACCCCGATCTTTCCTGCTGAGGAGGTTTCAGATGCAAGAGCAAGTGAGCCTGATACGCCGATCTTTCCTGCAGAGGAGGCTTCTAAACGCAGAACACTAGCTTCTAAACGCAGAGCACTAGCTGACGCAAGAGCAAGTGAGCCTGGTACCCCGATCTTTCCTGCAGAGGAAGTTTCTAAAGAAGAGAACAATCGTCTGTCGTTTTCTCTTTCAAATGTTGAACTGATTGCAGAACCCAACTTTGAGGCAGATGCAGGAATTGAGTCTAACCTCGTCTCTGGGCCAGGCCTTCAGAAAATGCCAACAAGAAGCCATTTTAAACCTGAGGGGGACAGTAATGACTCTTTTGGAGGTGAAATTCCGCATCCTGAAATTTCAACACAGGATGAAACGGATAATCTGCTTGCAGAGGTTTTCCCACCTTTTGTACAACATGACTCTCTGTCCGCGCACTACAATCTTCTGAATTACTCTGAAATTGTAGCTAATGAATACTCTGAGTTTGAAACCGAGTTTGAACTTATGGACCTAGACTCTGAGGAAGCTTATGCACCCGGTGACTTGTCAGGAATTACCAAAGATTCTTGTACACTAGATGTTCCTGAAGAACTTGCATCTACTAGTTTAAATAACAACCAGGGACCTACAATTTCATCAAATCAAAATGTTCATAGTTGTACGGAATGTTCACAAACGGATCCAGCCCCCGATCTCAATTGTAAGGATTGTCCGAGGTGGTTTCACAAAAAGTGTTCACGCTGGATTGAATCACCATCTATGCTTGAAGAAGAATGGAAGTGTGGTGATTGCAGGGATTGGTCGTAG 5223 0.4233 MKLPRKTKATEPPPVPKRRGRPPKQRRTEDGTVTDVLKKPKPIVLIGRYVLKQFSKRVRIGKVVSYEVGLYRVVFENGVSEDMDSGIIRKILLKGCDFDGDLTRRKKKLDEMLSRKIDEAKETKSSELRAENEKERDETGEVTDDSMDLGLKAEKRIELPTLVLPPKLQLPRSSGTIGVPENYVSHLFSVYAFLRSFSYRLFLSPFTLDEFVGALNCRVANTLLDAVHVSLMRALKRKLENLSAEGSKIASKCLRYTDWSLLDALTWPVFLVQYLTVNGYTKGSEWKGFYNEILCGEYYSLPASRKLMILQILCEEVLESEELKAEMNMREESEVGKNYDAEDIPHAENEPKRVHQQHAKTADCQDEESLKSVSKLDAVNLPGNSEDEVDDNGDECRLCGMEGTLLCCDGCPAVYHSRCIGVMKMYIPEGEWYCPECKINMTEPTIARGTSLKGAEIFGMDLYGQLFMGTCDHLLVLNDSSSEFCLKYYNQNDIPEVIRVLYASMQHRHIYSSICTAILQYWNISESFILPCVPNGVHINSECSKIDENTSVTLLPHVVENDHNGVSLGKAEDGLTSVNGICNDNMVPSLDASLVTSSPTHETSDNTITKESPSTDMKLQKETATSSGVLTVNHQSDTNCPNPDNRSTAAILPKCSSVSNQFINYGHAKDMGLPMNLSLQTKGDQTGFGKGKGNITNDFVYMGCSYKPQSYINYYMHGDFAASAAANLAILSSEDSRSEGHMIDLRRATSENTNLIAKAFSLTVSRFVWPSSDKKLVEVPRERCGWCLSCKAPASSKKGCMLNHAAICATKSAVRTFSGLAPVRSGEGIGPTIATYVIYMEESLHGLIDGPFLSGNYRRQWREQMERATSFNNIMPLLLKLEENIRSIAFCGEWLKLTDEWLVESLTIRRSATSILGTTQTRASCDLGRKQPIKYVVDPHRENFGWRNSKYTKSVFQKAALPKFLVRKAARQGGSKKILSIIYPDSAVSEIPKRSRQLVWRAAVQMSRNASQLALQVRHLDFHIRWIDLIQPEYNLQDGKVQDTEVSAFRNANICDKKREQGKTLYDIDFGSQKHVPSRVLKNAKIDQGPKRDKYWFPETRTPLYLIKEYEVRNEKEPSYKDNFNIAPQWHKRRLNAIFTDIFSYLTYKRDNLDPPSCSVCKQGVFFRNALKCSACQGYCHEGCSIIPTFPTYTDVELLTTCKQCYHTRLLTLKETNNKSPTSPLLSKGHEHSPLTILKGLKPKCDNQILLSTRAKDCRSDMEKVAAYSSLESKSSRRKSSWGIIWKKNSSEDSGLDFRLKKIILKRRTSLPQLEPVCHLCQNSYRPDLMYIGCETCTRWYHAEALELEESQIFSVLGFKCSRCRKIKSPACPYSQASQKKDSGADSGSGTLADAIASEPDTAIFAEEVSKRRTLADARANEPDTPIFPAEEVYDARASEPDTPIFPAEEASKRITLADARASEPDTPIFPAEEVSDARASEPDTPIFPAEEASKRRTLASKRRALADARASEPGTPIFPAEEVSKEENNRLSFSLSNVELIAEPNFEADAGIESNLVSGPGLQKMPTRSHFKPEGDSNDSFGGEIPHPEISTQDETDNLLAEVFPPFVQHDSLSAHYNLLNYSEIVANEYSEFETEFELMDLDSEEAYAPGDLSGITKDSCTLDVPEELASTSLNNNQGPTISSNQNVHSCTECSQTDPAPDLNCKDCPRWFHKKCSRWIESPSMLEEEWKCGDCRDWS 1740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02403 1740 MobiDBLite consensus disorder prediction 595 618 - -
Vifa1g02403 1740 MobiDBLite consensus disorder prediction 1564 1587 - -
Vifa1g02403 1740 MobiDBLite consensus disorder prediction 350 388 - -
Vifa1g02403 1740 Pfam PHD-finger 396 438 IPR019787 -
Vifa1g02403 1740 MobiDBLite consensus disorder prediction 350 373 - -
Vifa1g02403 1740 MobiDBLite consensus disorder prediction 122 144 - -
Vifa1g02403 1740 SUPERFAMILY FYVE/PHD zinc finger 1315 1370 IPR011011 -
Vifa1g02403 1740 CDD PHD_SF 1691 1736 - -
Vifa1g02403 1740 Coils Coil 232 252 - -
Vifa1g02403 1740 ProSiteProfiles Zinc finger PHD-type profile. 1689 1739 IPR019787 -
Vifa1g02403 1740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1307 1383 IPR013083 -
Vifa1g02403 1740 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 286 328 IPR028942 -
Vifa1g02403 1740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 448 IPR013083 -
Vifa1g02403 1740 ProSiteProfiles Zinc finger PHD-type profile. 393 440 IPR019787 -
Vifa1g02403 1740 PANTHER PHD FINGER FAMILY PROTEIN 119 1703 - -
Vifa1g02403 1740 SMART PHD_3 1691 1737 IPR001965 -
Vifa1g02403 1740 SMART PHD_3 395 438 IPR001965 -
Vifa1g02403 1740 SMART PHD_3 1157 1206 IPR001965 -
Vifa1g02403 1740 SMART PHD_3 1317 1365 IPR001965 -
Vifa1g02403 1740 ProSiteProfiles DDT domain profile. 181 241 IPR018501 -
Vifa1g02403 1740 ProSitePatterns Zinc finger PHD-type signature. 396 437 IPR019786 -
Vifa1g02403 1740 Pfam DDT domain 183 237 IPR018501 -
Vifa1g02403 1740 MobiDBLite consensus disorder prediction 1 32 - -
Vifa1g02403 1740 ProSitePatterns Zinc finger PHD-type signature. 1692 1736 IPR019786 -
Vifa1g02403 1740 CDD PHD_SF 1317 1364 - -
Vifa1g02403 1740 MobiDBLite consensus disorder prediction 1374 1393 - -
Vifa1g02403 1740 SUPERFAMILY FYVE/PHD zinc finger 381 443 IPR011011 -
Vifa1g02403 1740 CDD PHD2_CHD_II 396 437 - -
Vifa1g02403 1740 SMART testlast3 181 241 IPR018501 -
Vifa1g02403 1740 SUPERFAMILY FYVE/PHD zinc finger 1683 1737 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02403 Vifa-Chr1 386733333 386740673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02403 271 529 EF-hand Containing Proteins AT5G22760 45.161 7.78e-67 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vifa1g02403 DDT 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02403 - - psat:127086572 2986.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02403 1 386733333 386740673 Vifa1g02403 1 386733333 386740673 ECH