Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02402 ATGAGCGAAAAGAGAAGAATAAGCCTTGTAGCATGCTCATACGAACGCTTCATCTGGGGTTTCACTCTCAACCCCAACAAACAAACCCTAAACCCTCTCTTCTCCTACCCTTCCCATCTCTCCCTAATCAAATTCGTCGCCATCTCCGGTTCCGTCGTCGCCTCCGGCGGCTCCGACGACACTATCCAACTCTACAATCTCTCCGCCGCTTCCTCCCTCGGTTCCCTCACCCACCACTCCTCCACCGTCACCGCTCTCTCGTTCTACTCGCCTCCTCATCTTCCTTTCCCTCGCAATCTCGTTTCTGCAGATGCCGACGGTTCCCTCGCGATCTTCGATGCTGACGGTTTCGTTCATCTCAAGACACTTCCTGTTCATAAAAAGGCTATCAATGATCTAGCTCTTCATCCGTCCGGGAAGCTTTCCCTGACTGTTTCGCGGGATAATTATTTTGCGATGGTGAACCTTGTTCGTGGTCGGAGGAGCTTTTGTTGTCGGTTGGATAAAGAGGCGTCAATTGTTCGATTTGATGCTTCCGGTGATTCGTTTTTCATGGTTGTTGATAAGGTTGTTTCTGTTCATCAAGCGGAAGATGCTAGGTTATTGCTTGAATTGCAATGCCAGAATCGTGTTTTATGCGCTGCACCTGCTAGGGTTATACTCTACTGCATACATGTGCTGCAATTATTATGGAGAGAATTCATCAAAGTTATGGAGAGAATTCTCTTTGCTGTATTCACTTGTGTTCTAGCACTTGGAGGTTCGATAATAGGAACAATAGGAGGAGCTATAAAAGGCCAAACCACAGAAGCTGGTTTTCTTGATGGAGCTTGCAAAGGAGCAATTGGAGGAGCCATTGCAACCATAGAGTTTATGAGTTTAGCTTCTGATGGTGAGTCATTTTCCAAGGTTGCTTTGTTGACAAGTTTATTAAATAGAAAAGTGTTTATGGAATGGATATGTCCAACTGTGGCACAAGCTTATATAAATTCAGTAGAAGGAGCTTATGGAGGAGTGGTTTCAGATATTTATGACAGCATGGGAGTTAAAGGGATGTCACAAACTTGTATTATGAAACTCCCATTTCATAAATTTAACTCTTCCGACAAAATTATGAAATTATACAATGAATCATGCTGCTCAATTTGCTTCCAGGATTTTGAGAACGGAGAATTGGTGAGAATACTTCCAAAATGTTGTCACATTTATCATTTAGAATGCATTGACAAATGGCTAGTACAACAAGGATCGTGTCCTATTTGTAGAACTTATATTCTTCAATAG 1284 0.4315 MSEKRRISLVACSYERFIWGFTLNPNKQTLNPLFSYPSHLSLIKFVAISGSVVASGGSDDTIQLYNLSAASSLGSLTHHSSTVTALSFYSPPHLPFPRNLVSADADGSLAIFDADGFVHLKTLPVHKKAINDLALHPSGKLSLTVSRDNYFAMVNLVRGRRSFCCRLDKEASIVRFDASGDSFFMVVDKVVSVHQAEDARLLLELQCQNRVLCAAPARVILYCIHVLQLLWREFIKVMERILFAVFTCVLALGGSIIGTIGGAIKGQTTEAGFLDGACKGAIGGAIATIEFMSLASDGESFSKVALLTSLLNRKVFMEWICPTVAQAYINSVEGAYGGVVSDIYDSMGVKGMSQTCIMKLPFHKFNSSDKIMKLYNESCCSICFQDFENGELVRILPKCCHIYHLECIDKWLVQQGSCPICRTYILQ 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02402 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 426 IPR013083 -
Vifa1g02402 427 Pfam Ring finger domain 380 422 IPR001841 -
Vifa1g02402 427 SUPERFAMILY WD40 repeat-like 9 214 IPR036322 GO:0005515
Vifa1g02402 427 SMART WD40_4 116 155 IPR001680 GO:0005515
Vifa1g02402 427 SMART WD40_4 69 113 IPR001680 GO:0005515
Vifa1g02402 427 SMART WD40_4 29 66 IPR001680 GO:0005515
Vifa1g02402 427 CDD RING-H2_EL5-like 379 422 - -
Vifa1g02402 427 ProSiteProfiles Zinc finger RING-type profile. 380 422 IPR001841 -
Vifa1g02402 427 SMART ring_2 380 421 IPR001841 -
Vifa1g02402 427 SUPERFAMILY RING/U-box 373 425 - -
Vifa1g02402 427 Gene3D - 2 230 IPR015943 GO:0005515
Vifa1g02402 427 PANTHER PAK1 INTERACTING PROTEIN 1 8 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02402 Vifa-Chr1 386686569 386688772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02402 237 425 C3H Transcription Factor Family AT5G66070 35.784 6.21e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02402 K14830 - gmx:100777673 296.975