Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02398 ATGGGTAGCAAGGTCTCCGACGATCGCCTCTACACCGTCCGATCCATAGTCGGTTCGGAATTCACCGACATGGACATCATAAGAGCTCTTCATATGGCCAAAAACGACGTCACTGCCGCCATCAACATAATCTTCGACACCAGCACCCCTAAATCCCAACCCACTCACGCCATCAATAAACGGCGGGTTTCTCCTCCGAAATCAACTCCACCCTCGGTCACATCCAGTTGGAAGCGTAATGTCCATGCAGAAAACAAGAAATGTTCCGTCGAGGCTGATTCCACTGACTGGTGGTTCATTGGCTCCGGTGAAGTGGCGGGGCTGTCCACGTGTAAAGGGAGGACTATAAAATCAGGTGATGCAGTGATTTTCAAGTTTCCGTCTAAAAAGGTTTCTGTTTCGCCTTCTCCGGGTAAGGGTTTTGGGCGGGCAGTAGCTTGTTCGGAGATAGTTCGGTTTTCTAATGAACAAGATTGGGAGATTGGTAGAATACCAAACGAATGGGCTCGGTGTTTGTTGCCTCTGGTGCGGGATAATAAGGTTAAGGTTGAAGGGAAATGTGAATCTGCACCTAATGTTTTGGGCATCATGGATACTATCATTTTGTCAGTCAGTGTATTCATCAATAGGTCAATGTTTGTTAAGCAACATCAGGTTTCTCTTAAGGATGCTGCGAATTCGACAGATGAATCAGTGTTTCATCCTCTTCCAGCCCTGTTTCGATTGCTTGGTCTTAGTCCTTTCAAGAAGGCAGAGTTAACTCCTGGTGATTTCTGTTCCAACAAGCGTCCTTTCAGTCAAACGGTCACATCACTACATGCCAAGGCCGAGCGTCCTTTGCAAAATGGTCATGAGAATGAAACTGAGGATACTGTTCCCGAATTTGATCTTGAAAACATTGTTGGTGTTGCGTCAAGTTCAGAGTTAGAGGAAATGGACCCCCCTGAAAATCTTCTTTGTGATCTGCGACCCTATCAAAAACAAGCTCTTCATTGGATGATTCAGATGGAGAAGGGACGGCCAAGGAACGATACTACAACAACCCTTCATCCTTGTTGGGAGGCATATCGCCTGGCTGACAAGAGGGAGCTTGTTGTTTATTTGAATGCATTTTCTGGTGAAGCCACAACAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCCATGGGACTTGGAAAGACAGTAATGACCATATCCCTTCTCGTTGCCCATTCAGGAAGGGGTGGATTATTAGGCAGTCAACCCATAACACAGTCATTTATTGAAGGTGGCGAAGTTAGTGATACTGGTACAATTCCCAATTTTGCAGACATTCCAAAGAAGGTAACCAAATTTACTGGTTTTGATAAACCAATGAAGCAAAGTAATTCTCTAACAAGTGGCGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCACGTGCGCCCTGGGTCCCTGTCTCTATATGTTCATTATGGGCAAAGTAGGCCCAAAGATGCAAAAAGTCTAGCTCAGTGTGACGTTGTAATTACTACATACGGAGTTTTGGCTTCTGATTTTTCCAGTGAGAGTGCAGAGAATAATGGTGGACTCTTCTCAATTCGTTGGTTCAGAGTGGTTCTTGACGAAGCACATACTATAAAATCTTCTAAAAGTCAAGTTTCTATGGCTGCTTCTGCTCTAGTTGCTGACAATCGCTGGTGTCTTACTGGGACTCCAATCCAGAACAACCTTGAAGATGTTTACAGTCTTCTTCGCTTTTTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAGCTTATTCAGAAACCATTTGAGGGTGGCGATGAGAGAGGATTGAAATTAGTTCAGTCCATTTTGAAGCCTATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCTATACTTGTTCTCCCTCCTGCTGATATGCAGATAATTTACTGTGAACCCACAGAAGCTGAAAAAGACTTTTATGAGGCCCTATTCAAAAGATCTAAGGTAAAGTTTGATCAATTTGTTGAGCAAGGACGTGTTCTTCATAATTATGCTTCAATTCTAGAGCTACTTTTACGTCTTCGGCAATGCTGTGACCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCTGATCTAAAGAAACTAGCTAAGCGCTTCCTTAAAGGAACTTGTAATGCTTCAGAAGGTGAAGAAAAAGATGCACTCTCACGAGCTTATGTTCAAGAAGTTGTGGAGGAGCTGCGTAAAGGGGAGCAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACACCATGTGCTCACCGCCTTTGCCGGGAATGCCTCTTGGCAAGTTGGCGAAATTCTATGTCTGGTTTATGTCCTGTTTGTAGGAAAACGGTGTGCAAGCAGGATCTTATCACTGCCCCTACCGAGAGTCGATTTCAGGTTGATATAGAGAAGAACTGGGTAGAGTCATGCAAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAAAATATCATTTCTTCGTCTTGACGGGACATTGAATCTGCAGCAGCGGGAAAAAGTAATCAAACAATTCTCAGAAGACAGTGACATACAGGTGTTGTTGATGTCGTTAAAAGCAGGTGGAGTGGGTATAAATCTAACTGCAGCTTCCAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATCAAACGGTTTATTGTGAAGGGGTCAGTTGAGCAGAGAATGGAGGCAGTGCAAGCACGCAAACAGAGAATGATATCTGGTGCCTTGACGGATCAGGAAGTTCGATCTGCACGGATTGAGGAGTTGAAGATGCTTTTTACTTAG 2952 0.4448 MGSKVSDDRLYTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTSTPKSQPTHAINKRRVSPPKSTPPSVTSSWKRNVHAENKKCSVEADSTDWWFIGSGEVAGLSTCKGRTIKSGDAVIFKFPSKKVSVSPSPGKGFGRAVACSEIVRFSNEQDWEIGRIPNEWARCLLPLVRDNKVKVEGKCESAPNVLGIMDTIILSVSVFINRSMFVKQHQVSLKDAANSTDESVFHPLPALFRLLGLSPFKKAELTPGDFCSNKRPFSQTVTSLHAKAERPLQNGHENETEDTVPEFDLENIVGVASSSELEEMDPPENLLCDLRPYQKQALHWMIQMEKGRPRNDTTTTLHPCWEAYRLADKRELVVYLNAFSGEATTEFPSTLQMARGGILADAMGLGKTVMTISLLVAHSGRGGLLGSQPITQSFIEGGEVSDTGTIPNFADIPKKVTKFTGFDKPMKQSNSLTSGGNLIICPMTLLGQWKAEIETHVRPGSLSLYVHYGQSRPKDAKSLAQCDVVITTYGVLASDFSSESAENNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAASALVADNRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLKKLAKRFLKGTCNASEGEEKDALSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSMSGLCPVCRKTVCKQDLITAPTESRFQVDIEKNWVESCKWTAFLDLLQIPFTRNKISFLRLDGTLNLQQREKVIKQFSEDSDIQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGSVEQRMEAVQARKQRMISGALTDQEVRSARIEELKMLFT 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02398 983 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 380 599 IPR014001 -
Vifa1g02398 983 Pfam SNF2-related domain 325 715 IPR000330 GO:0005524|GO:0140658
Vifa1g02398 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 839 IPR013083 -
Vifa1g02398 983 Gene3D - 840 982 IPR027417 -
Vifa1g02398 983 Gene3D - 651 751 IPR027417 -
Vifa1g02398 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 649 977 IPR027417 -
Vifa1g02398 983 ProSiteProfiles Zinc finger RING-type profile. 771 811 IPR001841 -
Vifa1g02398 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 637 IPR027417 -
Vifa1g02398 983 SMART ring_2 771 810 IPR001841 -
Vifa1g02398 983 Pfam Zinc finger, C3HC4 type (RING finger) 771 810 IPR018957 GO:0046872
Vifa1g02398 983 Pfam Helicase conserved C-terminal domain 836 930 IPR001650 -
Vifa1g02398 983 SUPERFAMILY RING/U-box 758 817 - -
Vifa1g02398 983 Gene3D - 380 649 IPR038718 -
Vifa1g02398 983 SMART helicmild6 847 930 IPR001650 -
Vifa1g02398 983 SMART ultradead3 318 621 IPR014001 -
Vifa1g02398 983 MobiDBLite consensus disorder prediction 51 78 - -
Vifa1g02398 983 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 814 983 IPR001650 -
Vifa1g02398 983 CDD SF2_C_SNF 840 941 - -
Vifa1g02398 983 ProSitePatterns Zinc finger RING-type signature. 786 795 IPR017907 -
Vifa1g02398 983 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 91 983 - -
Vifa1g02398 983 SMART HIRAN_2 100 208 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vifa1g02398 983 Pfam HIRAN domain 100 204 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vifa1g02398 983 CDD DEXDc_SHPRH-like 322 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02398 Vifa-Chr1 385968784 385982459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02398 1 983 RAD5 or RAD16-like Gene Family AT5G22750 67.988 0.0 1396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa1g02398 SNF2_N 8.3e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02398 K15505 - gmx:100794452 1619.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02398 1 385968784 385982459 Vifa1g02398 1 385968784 385982459 ECH