Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02395 ATGGAAGAGGATGATAAGAACGCGGCAGCAGCAAACATGATCGGTACTTCCGCTACCGATCATCAGAAAGAAGAAGATGATGATTATGATGATGATGATGATGATGTACTTCCGAAAACACCATTGGATTCTTCACCCAACATAACACCAAAGAAGAGAACGGAGGGACCTTCAGAAATGAATAATTCATCAGCATCTCCATTGCAATTGCCATTGGAATCTTCTCCCGACATAACACCAAAGAAGAGAAAGGAGGGACCTTCTCTAACATCTTCTGCAGACACTCCAACCAAGAGGAGAAGAGGACGCCCTCCAGGTTCCGGTTCCGGATCAAAGAAGAGAAAAGAAGAACCATCAGAAACAAGTTCTGGTATCAGTGATGAAAAATTCAGCCCTCATGTGATTGTGTTGAGAGACGGCCAGGATGTGGTAGAAGTTCTATACAATATATCCGTGGCAAATTATCCTAAAATTGTTACCGTATTTTCTGCGTCCGGTTCTGTATCAGAAATTACCGCTCTTACTCCGAATGGTCCCAGGCACCGCAAGGGAGCATTTCAGATTCTTTTTCTGTCTATAAGATCTCTGGTTGGTGATAATGGTCGTCACTGTCGTGAAAAGGCAATGTGCACCGTTACATGCACAGATGATCAGGGAAATCTGTTTGCAAATACTTGTGTCAATTCCCTCATAGCGGCTGGCCGTGTTGACATTATCGCGGCCATATCCATGGTAGAAACCACTAAGAGAACAGGTGCAAGAATGGTGGAGTTTGCTGCTGCTCCTCAAAATAATGAAGTAACTCCTATAGCAGCCATCCCTCTTCAAATGATTAAAGAAAATTCGGATCCAGCCAAAGAAGAAGGTTGTACATCAGGTTTTCTACAAACAACCCCAACAGTGGGAGATGGAAACATAATAAATGCGACATCAGCAACAGCTAGTGCTTCAAATGATCAGGACTTGAAGTCTCCTTCTGTTGGGGACACTTGCCAGGACATGAAATCTCCTTCTGTTGGGGACACTTGA 1029 0.4383 MEEDDKNAAAANMIGTSATDHQKEEDDDYDDDDDDVLPKTPLDSSPNITPKKRTEGPSEMNNSSASPLQLPLESSPDITPKKRKEGPSLTSSADTPTKRRRGRPPGSGSGSKKRKEEPSETSSGISDEKFSPHVIVLRDGQDVVEVLYNISVANYPKIVTVFSASGSVSEITALTPNGPRHRKGAFQILFLSIRSLVGDNGRHCREKAMCTVTCTDDQGNLFANTCVNSLIAAGRVDIIAAISMVETTKRTGARMVEFAAAPQNNEVTPIAAIPLQMIKENSDPAKEEGCTSGFLQTTPTVGDGNIINATSATASASNDQDLKSPSVGDTCQDMKSPSVGDT 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02395 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 241 IPR005175 -
Vifa1g02395 342 MobiDBLite consensus disorder prediction 1 127 - -
Vifa1g02395 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 250 - -
Vifa1g02395 342 Gene3D - 132 259 - -
Vifa1g02395 342 MobiDBLite consensus disorder prediction 305 342 - -
Vifa1g02395 342 MobiDBLite consensus disorder prediction 109 123 - -
Vifa1g02395 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 308 IPR039605 GO:0003680
Vifa1g02395 342 MobiDBLite consensus disorder prediction 42 73 - -
Vifa1g02395 342 ProSiteProfiles PPC domain profile profile. 127 266 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02395 Vifa-Chr1 385564520 385565882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02395 87 241 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 31.447 5.58e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02395 - - psat:127107851 320.087